Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F13
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 198 4e-51
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 157 7e-39
Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 28 7.0
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 7.0
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 7.0
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 7.0
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 7.0
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 7.0
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 7.0
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 9.2
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 9.2
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 9.2
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 198 bits (483), Expect = 4e-51
Identities = 101/212 (47%), Positives = 140/212 (66%), Gaps = 1/212 (0%)
Frame = +3
Query: 150 RHLNVHXYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGT 329
R L +H + +L+++ I VP F VA+ + A A + KD V+KAQVLAGGRGKG
Sbjct: 22 RTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGR 81
Query: 330 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYYVA 509
F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV +R F RREYY +
Sbjct: 82 FSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMVCKRLFTRREYYFS 141
Query: 510 IMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDDQICRVIEKIGL-Q 686
I ++R+ NGP++IASSQGGVNIE+VAA NPDAI PID+ GIT + + K+G +
Sbjct: 142 ITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEIAVKMGFSK 201
Query: 687 EFATEAHGMIKKMYDLFLKKDALLIEVNPYAE 782
+ +A +I+K+Y +F DA L+E+NP AE
Sbjct: 202 DCEQQASEIIEKLYQMFKGSDATLVEINPMAE 233
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 157 bits (382), Expect = 7e-39
Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 3/232 (1%)
Frame = +3
Query: 102 LLPASSANKFPSKQQVRHLNVHXYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKD 281
L A + +K K Q R LN+ + S +L HG V F VA + EA + +
Sbjct: 2 LRAAGNLSKSMMKSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHE 61
Query: 282 IVLKAQVLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRIC 455
V+KAQ+LAGGRGKG F NG KG GV + + A + +M+ + LVTKQT + G
Sbjct: 62 YVVKAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRV 121
Query: 456 NMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVS 635
+ VM+ E +RE Y+A++M+R NGPV++AS GG++IE VA + P+ I PIDI
Sbjct: 122 DKVMIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQM 181
Query: 636 GITDDQICRVIEKIGLQ-EFATEAHGMIKKMYDLFLKKDALLIEVNPYAEXA 788
G+T+ Q ++ + + + + A IK++YDLF+ DA +E+NP E A
Sbjct: 182 GMTEGQSLKIAKDLQFEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETA 233
>Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical
protein K10D6.2c protein.
Length = 246
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 671 FDNTANLIISNTRNNIN 621
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical
protein K10D6.2b protein.
Length = 287
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 671 FDNTANLIISNTRNNIN 621
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 671 FDNTANLIISNTRNNIN 621
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 421 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 278
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 421 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 278
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 99 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 421 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 278
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 421 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 278
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 421 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 278
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 421 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 278
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 564 GVNIEDVAAENPDAITYEP 620
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 564 GVNIEDVAAENPDAITYEP 620
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 564 GVNIEDVAAENPDAITYEP 620
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,416
Number of Sequences: 27780
Number of extensions: 401826
Number of successful extensions: 1092
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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