Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F09
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.63 
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    27   2.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   3.3  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   4.4  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   5.8  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   7.7  

>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 447 NTKQYSTTLPCYLSILIPKSVKYYLFPPM 533
           N+ +  T LP  L  + PKS++ +LFPP+
Sbjct: 37  NSLENDTQLPQILFCINPKSIRNFLFPPI 65


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 450 TKQYSTTLPCYLSILIPKSVKYYLFPPMLSTLEDIILNCHLTYR 581
           ++QYST +P +L+    + +K    P +   LE  ILN +  Y+
Sbjct: 205 SEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYK 248


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 92  TFINCLKPASHILGASSGIGQKKRLAAVFECPLIWYT 202
           T+   LKP + +L A+S  GQK   A V+  P + ++
Sbjct: 344 TYTKDLKPTNTLLIAASSYGQKYGAAKVWNIPTVHHS 380


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 306 P*GGKAASEDSRSVLYTGLVCSSISCDVIQEASHAVYQIR 187
           P   K   +DS  VLYT +V    +   I +A  A Y IR
Sbjct: 215 PRSAKKLDQDSEFVLYTVVVFKKTADSFITKAREAKYTIR 254


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 205 CGVPNQGTFKNGC*SFLLADPGRSPQNV 122
           CG P    F+ G  S LL +PGR  +N+
Sbjct: 338 CGCPIDLVFRQGAGSSLLENPGRLLRNL 365


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 374 HYVESPAYYE----LYQSVLQHRGLSPSQYETVLYNASLLLINSDPEIGQILPLPPNAKY 541
           H   +P +YE    LYQ+  + R L+P+  +  L +ASL    +       L   P+ K 
Sbjct: 387 HITGAPMFYEEFNELYQAFWRPRPLNPTLLQNALTSASLPSPPTPHASASKLAAKPSVKP 446

Query: 542 VGGH 553
            G +
Sbjct: 447 AGAY 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,327
Number of Sequences: 5004
Number of extensions: 74263
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)