Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F09
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0948 + 24691102-24691116,24691253-24691351,24691602-24691877     29   3.5  
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748...    29   3.5  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    29   3.5  
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    29   4.7  
08_02_1592 + 28078055-28078966                                         29   6.2  
08_01_0793 - 7685702-7686955                                           29   6.2  
04_03_0187 + 12436934-12437108,12438020-12439044                       29   6.2  

>12_02_0948 + 24691102-24691116,24691253-24691351,24691602-24691877
          Length = 129

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 254 DWSAPALAVTSSRRHRMRCTKSGDIQKRLLI 162
           D SAP L   +SRRHR R    G + + +L+
Sbjct: 74  DMSAPHLPAAASRRHRQRQRLDGGVVESILV 104


>05_04_0367 -
           20672776-20673550,20674097-20674320,20674626-20674843,
           20675133-20676534
          Length = 872

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +2

Query: 86  RETFINCLKPASHILGASSGIGQKKRLAAVFECPLIWYTACDASWMTSQLMLEQTSPVYS 265
           R+ F   L+  SH+L   +G  +  ++    E  L+ + +C ++W+ SQ    +T   + 
Sbjct: 628 RKQFHAILETKSHVLIPKNGPERNSKITLELEMELLNWCSCFSNWILSQKAYIETLNGWL 687

Query: 266 TDLLSSEAALPPYG 307
              L  E    P G
Sbjct: 688 VKWLPEEKEETPDG 701


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 561  NCHLTYRRTCKIY*TMPNTEQYCSARTVRSC 653
            NC  TY +TC     +P    YC   T RSC
Sbjct: 1042 NCPSTYHQTCLSDQELPEGSWYCHNCTCRSC 1072


>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 416  PIDRVRNKQETRRSGSCK*SNHLDTLDVPASSPSPESHKEARPLQ---RTVDQCC 261
            P D  ++K+  +R+GS K SN   T D    S  P+S   A  L+      D CC
Sbjct: 1001 PGDDGKSKESIQRTGSFKDSNKNATKDTRNLSQEPQSASSAEDLKVHTSVKDVCC 1055


>08_02_1592 + 28078055-28078966
          Length = 303

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 243 SSISCDVIQEASHAVYQIRGHSKTAANLFFWPIPDEAPK 127
           S  S D+I E +HA+Y+   + KT    + W    + PK
Sbjct: 121 SGFSDDMIMEKAHALYKSENNDKTFTLEYMWRELKDQPK 159


>08_01_0793 - 7685702-7686955
          Length = 417

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 243 SSISCDVIQEASHAVYQIRGHSKTAANLFFWPIPDEAPK 127
           S  S D+I E +HA+Y+   + KT    + W    + PK
Sbjct: 235 SGFSDDMIMEKAHALYKSENNDKTFTLEYMWRELKDQPK 273


>04_03_0187 + 12436934-12437108,12438020-12439044
          Length = 399

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 243 SSISCDVIQEASHAVYQIRGHSKTAANLFFWPIPDEAPK 127
           S  S D+I E +HA+Y+   + KT    + W    + PK
Sbjct: 217 SGFSDDMIMEKAHALYKSENNDKTFTLEYMWRELKDQPK 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,823,850
Number of Sequences: 37544
Number of extensions: 514729
Number of successful extensions: 1314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)