Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F09
(847 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.88
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 2.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 2.7
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 3.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.5
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 4.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 4.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 4.7
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 4.7
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 6.2
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 22 8.2
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 8.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 8.2
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 22 8.2
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 22 8.2
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.0 bits (52), Expect = 0.88
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 322 DEAGTSSVSKWLDHLHDPLRRVSCLLRTLSIGA 420
+ AGTS KWL + R C LR L GA
Sbjct: 25 ESAGTSC--KWLSEGGNDTRSADCTLRVLDPGA 55
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 666 LTYQGKTLLSALNNIAPCLALS 601
+T + KTL +N I PC+++S
Sbjct: 229 ITLRRKTLFYTVNLIVPCVSIS 250
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 666 LTYQGKTLLSALNNIAPCLALS 601
+T + KTL +N I PC+ +S
Sbjct: 238 ITMRRKTLFYTVNIIIPCMGIS 259
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 666 LTYQGKTLLSALNNIAPCLALS 601
+T + KTL +N I PC+ +S
Sbjct: 238 ITMRRKTLFYTVNIIIPCMGIS 259
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 666 LTYQGKTLLSALNNIAPCLALS 601
+T + KTL +N I PC+ +S
Sbjct: 234 ITMRRKTLFYTVNLIIPCMGIS 255
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 23.0 bits (47), Expect = 3.5
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = -2
Query: 249 VCSSISCDVIQEASHAVYQI 190
+C + V+Q+ SH +Y++
Sbjct: 134 LCKELGISVVQKVSHTLYKL 153
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 3.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 666 LTYQGKTLLSALNNIAPCLALS 601
+T + KTL +N I PC+ +S
Sbjct: 230 ITLRRKTLFYTVNLIIPCVGIS 251
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.6 bits (46), Expect = 4.7
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 380 VESPAYYELYQSVLQH 427
+ PA+Y LYQ++L +
Sbjct: 415 MRDPAFYMLYQNILSY 430
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 655 RQDLTVRAEQYCSVFGI 605
R+ +VRAE YC++F +
Sbjct: 530 RRVASVRAETYCNLFSL 546
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 655 RQDLTVRAEQYCSVFGI 605
R+ +VRAE YC++F +
Sbjct: 498 RRVASVRAETYCNLFSL 514
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 144 PDEAPKMWDAGFRQLIKVSRLLLPRFISI 58
P+ K W A R L R+LL RF+ I
Sbjct: 796 PNGIVKTWIAHDRYLPNSLRILLKRFLDI 824
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.2 bits (45), Expect = 6.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 380 VESPAYYELYQSVLQH 427
+ PA+Y LYQ +L +
Sbjct: 415 MRDPAFYMLYQKILSY 430
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 206 CDASWMTSQLMLEQTSPVYSTDLLS 280
CD W+ ++ T P+ S LL+
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLT 156
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 93 LLLIV*SLHPTFWGLRPGSAKRK 161
L+L + + P FW LR A++K
Sbjct: 321 LMLPLGAGRPAFWSLRKAFARKK 343
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 666 LTYQGKTLLSALNNIAPCLALS 601
+T + KTL +N I PC+ ++
Sbjct: 243 ITMRRKTLFYTVNLIIPCVGIT 264
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 206 CDASWMTSQLMLEQTSPVYSTDLLS 280
CD W+ ++ T P+ S LL+
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLT 156
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 206 CDASWMTSQLMLEQTSPVYSTDLLS 280
CD W+ ++ T P+ S LL+
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLT 156
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,025
Number of Sequences: 438
Number of extensions: 5140
Number of successful extensions: 30
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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