Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F07
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 164 9e-42
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 164 9e-42
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 77 2e-15
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 77 2e-15
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 77 2e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 48 7e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 33 0.037
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 27 1.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 1.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.5
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 4.3
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ... 25 7.5
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 164 bits (398), Expect = 9e-42
Identities = 77/97 (79%), Positives = 81/97 (83%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILA 298
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALA 86
Query: 299 MKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 409
KYNCEK ICRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 87 SKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +1
Query: 40 MQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 164 bits (398), Expect = 9e-42
Identities = 77/97 (79%), Positives = 81/97 (83%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILA 298
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALA 86
Query: 299 MKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 409
KYNCEK ICRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 87 SKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +1
Query: 40 MQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +1
Query: 40 MQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 103 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 179 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 255 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 331 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +1
Query: 19 VFHRRNTMQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
V R MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 114
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +1
Query: 19 VFHRRNTMQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
V R MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 146 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 190
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +1
Query: 19 VFHRRNTMQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
V R MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 222 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 266
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +1
Query: 19 VFHRRNTMQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
V R MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 298 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 342
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +1
Query: 40 MQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 76.6 bits (180), Expect = 2e-15
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +2
Query: 119 KLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGG 268
K K + ++ QQRLIFAGKQLE GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +1
Query: 40 MQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
MQIFVKTL G ITLEVE+SDT++NVK+KIQ KEGIPP
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 48.4 bits (110), Expect = 7e-07
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +2
Query: 110 KMSKLKSK--PRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRLRGGT 271
K+S++K + ++ SQQRLI+AGKQ+ + Y+++ S LHLVL LRGG+
Sbjct: 22 KVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 40 MQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPP 153
M I VKTL G I L+++ +D + +K +++ KEGIPP
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPP 38
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 32.7 bits (71), Expect = 0.037
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 152 QSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLRL 259
+ +QRLI+AG+ L+ +L Y IQ ++HLV L
Sbjct: 41 KERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +3
Query: 21 FSSAQHNANLRQNPXGXXHYIGGGSFRHSRKCQS*NPSQGRYSSSPNNVSSLPGNN*KXA 200
F+S ++N L+ NP + F + R+C +Q S + L ++ A
Sbjct: 90 FNSTENNQKLQTNPSARWSLLDSMDFDNQRQCSDLESAQ-LGDSGLLKSTILSNSHIDIA 148
Query: 201 ALFQTITSRKNPHFTW 248
AL + TS P F++
Sbjct: 149 ALSSSKTSEPTPPFSY 164
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 7 LSKHVFHRRNTMQIFVKTLXGXPITLE-VEASDTLENVKAKIQAKEGIPP 153
LSK VF+ + + T+ G P+++E V+ +L N + +PP
Sbjct: 346 LSKRVFYSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPP 395
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 141 FLGLDFSFDIFESVGSFHLQCNGXPRKGFDEDLHCVAPMKNV 16
F GL F +ES+G + L C + FDE L+ A ++NV
Sbjct: 2880 FGGLIVPFKPYESLGKYMLSCLDDGKYAFDEYLY-HAEIQNV 2920
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/56 (17%), Positives = 28/56 (50%)
Frame = +2
Query: 83 WRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSDYNIQKESTLHLV 250
++W+ PT K + ++ +++R+ +AG +S+ + E+ L+++
Sbjct: 88 YKWEFPTAVKRVEFNEDDTRILAVTEERMGYAGTVTVFRVPISESDAAAETPLYVI 143
>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 28 RRNTMQIFVKTLXGXPITLEVEASDTLENVKAKIQAKEGIPPVPTTSHL 174
RR + +K L G + + + ++ +K +P VPTTSH+
Sbjct: 3 RRGALSTILKGLNGLSLRSPIPIWHV--SASPEVGSKYNLPTVPTTSHV 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,307
Number of Sequences: 5004
Number of extensions: 43941
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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