Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F06
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   159   5e-40
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   4.6  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    26   6.1  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   8.1  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  159 bits (385), Expect = 5e-40
 Identities = 74/136 (54%), Positives = 91/136 (66%)
 Frame = +2

Query: 296 HPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEA 475
           H   + W  S   S  DHAS+RRG++VY++VC ACHSL  IA+R+LV VTHT DEAK  A
Sbjct: 71  HFIQHDWPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMA 130

Query: 476 AEVMIKDGPDEEGNYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGED 655
           +EV  +DGPD+EGN F+RPGKLSD+LP                   DLS +  GR GG+D
Sbjct: 131 SEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARASNNGAAPPDLSCVVRGRHGGQD 190

Query: 656 YIFALLTGYMEPPAGV 703
           YI++LLTGY EPPAGV
Sbjct: 191 YIYSLLTGYTEPPAGV 206


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 117 TSFEKIWSSLASGLSAV 167
           +SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 243 PTPPPTTPKVDSHTFLFFCPSLSVGGQLTSLRPN*TI 133
           P+   T P+V SH FL  C SLS     T   P+ +I
Sbjct: 243 PSTRITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSI 279


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 695 QEVPCNQSVARRCNLRRPY 639
           +E+PC Q V R C+L++ Y
Sbjct: 103 EEMPCEQLVRRVCDLKQGY 121


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  WRPPSVGFVGHVF*KNM 136
           W+ PS+GFV  +F  N+
Sbjct: 61  WKSPSIGFVNRIFHPNI 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,051
Number of Sequences: 5004
Number of extensions: 58637
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)