Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F06
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 152 3e-37
09_02_0327 - 7284829-7284889,7284946-7286126 35 0.073
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 31 0.68
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138... 31 0.68
10_08_0870 - 21178136-21178534 30 1.6
04_04_0716 + 27513201-27513854 30 2.1
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 29 2.8
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 29 3.6
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 29 3.6
05_02_0026 + 5716467-5716655,5716833-5718797 28 6.4
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 6.4
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 28 8.4
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 8.4
02_02_0258 - 8374442-8375083 28 8.4
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 152 bits (368), Expect = 3e-37
Identities = 68/133 (51%), Positives = 88/133 (66%)
Frame = +2
Query: 311 PWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 490
PW H+G SS DHAS+RRG++VY QVC +CHS+ I++R+LV V +TE+E KA AAE+ +
Sbjct: 457 PWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEV 516
Query: 491 KDGPDEEGNYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGEDYIFAL 670
DGP++EG F RPGKLSD P DLSLI R G++Y+FAL
Sbjct: 517 VDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHNGQNYVFAL 576
Query: 671 LTGYMEPPAGVXL 709
LTGY +PPAGV +
Sbjct: 577 LTGYRDPPAGVQI 589
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 264 SSAKSRAPTPPPTTPKVDSHTFLFFCPSLSVGGQLTSLRPN*TIFFQKTCPTNP 103
+S SR P PPP P + H FLF L++G + P F PT+P
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLLAYLAMGVTFYAALPG--NFTSSAGPTHP 189
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 31.5 bits (68), Expect = 0.68
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 264 SSAKSRAPTPPPTTPKVDSHTFLFF-CPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGG 91
+++ S AP+PPP P+V + F C S S GG RP + F QK T G
Sbjct: 12 AASPSPAPSPPPPRPRVSAAAAASFPCCSTSAGGLRLRSRP--SRFPQKAATTRSGRAG 68
>02_01_0206 +
1388149-1388330,1388527-1388629,1388896-1388964,
1389684-1389803,1390352-1390482,1390840-1390881,
1390961-1391138,1391241-1391319,1391441-1391610,
1392503-1392629,1392731-1392846,1392926-1393033,
1393118-1393180,1393283-1393456,1393814-1393978
Length = 608
Score = 31.5 bits (68), Expect = 0.68
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 267 CSS-AKSRAPTPPPTTPKVD-SHTFLFFCPSLSVGGQLTSLRPN*TIF 130
CS+ A S P+PPPT P V S + PSL+VG L PN I+
Sbjct: 31 CSATASSATPSPPPTGPPVTASPSSASTRPSLAVGEALHYTPPNHIIY 78
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 279 ACTDCSSAKSRAPTPPPTTP 220
AC DC S K AP P P TP
Sbjct: 21 ACPDCPSPKPPAPRPKPPTP 40
>04_04_0716 + 27513201-27513854
Length = 217
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 294 ASEPDACTDCSSAKSRAPTPPPTTPKVDSHTFLFFCPSL 178
A PD C+ S+A +P PPP + D + LF P L
Sbjct: 142 AKSPDTCSVASAA---SPQPPPPDAEADPDSTLFDLPDL 177
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 81 KHGGHRR*DLWGTSFEKIWSSLASGLSAVHQHSRMDKKTEKCGCPLWEW*VEVLEL-YFL 257
+H G R +W +W SLA+ LS + R+ K +W VL Y
Sbjct: 632 RHNGDYRGGVWKQVTIVLWLSLAALLSPGEKERRLRSSLSKASMAVWLLVAVVLATNYTA 691
Query: 258 HLSSLCRHQAL 290
LSSL Q L
Sbjct: 692 SLSSLMTAQRL 702
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = +2
Query: 275 QASGSEAHPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTE 454
++ + AHP H P+ SGW S D + E KQ + + ++ ++
Sbjct: 70 ESDPATAHPQHLPFEPSGWDS--DPPQLPPEQEQQKQKPQPAEKPRK-SWADMAQEDELA 126
Query: 455 DEAKAEAAEVMIKDGPDEEGNYFERPG 535
A+ +AA DG EEG+ RPG
Sbjct: 127 AAAEEDAAAAAADDG--EEGSEAGRPG 151
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 138 SSLASGLSAVHQHSRMDKKTEKCGCPLWEW*VEVLELYFLHLSSLCRHQALKLTHLTTL 314
S ++ G S ++ S + GCP+ + V+ E Y S+CR HL T+
Sbjct: 121 SDVSFGRSTAYRFSAARNRFVVLGCPVLGYLVDAEEYYVSGCISMCRKSQAGNDHLNTI 179
>05_02_0026 + 5716467-5716655,5716833-5718797
Length = 717
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 59 IFHYDGFQTWRPPSVGFVGHV 121
+F GFQ W+ S F GHV
Sbjct: 74 VFSKSGFQNWKKASESFAGHV 94
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 294 LTHLTTLGITVAGSAPWTTLVSVGVMKFTNKSAR 395
L +L++ I VAG++ WT L V K TN+++R
Sbjct: 382 LQNLSSATIQVAGTSNWTKLEQKLVAKGTNRTSR 415
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 267 CSSAKSRAPTPPPTTPKVDSHTFLFFCPSLSV 172
C+ K+R PTPPP P+ L F LSV
Sbjct: 59 CARPKTRHPTPPPPPPR---RCHLLFTMKLSV 87
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 258 AKSRAPTPPPTTPKVDS 208
AK + P PPP++P+VD+
Sbjct: 78 AKEKKPPPPPSSPRVDA 94
>02_02_0258 - 8374442-8375083
Length = 213
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 689 VPCNQSVARRCNLRRPYVPSRSETSPVGKH-HCLQHEPHFHWGMETAGSQKV 537
+PC + RR RRP + S S + H + L+ EP WG A + +
Sbjct: 89 LPCRCARRRR---RRPATSTSSSASALPPHMYVLEREPPVRWGARVATADDI 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,009,097
Number of Sequences: 37544
Number of extensions: 454471
Number of successful extensions: 1775
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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