Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F06
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15) 132 4e-31
SB_58357| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06) 35 0.075
SB_48339| Best HMM Match : BAG (HMM E-Value=5.9) 33 0.23
SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 30 1.6
SB_50798| Best HMM Match : CBS (HMM E-Value=2.8) 30 1.6
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12) 30 1.6
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 30 1.6
SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 30 1.6
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 30 1.6
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 30 1.6
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 30 1.6
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15) 30 1.6
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08) 30 1.6
SB_16433| Best HMM Match : DUF1332 (HMM E-Value=5.4) 29 2.8
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15) 29 3.7
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45) 29 4.9
SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7) 28 8.6
>SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)
Length = 134
Score = 132 bits (318), Expect = 4e-31
Identities = 57/101 (56%), Positives = 75/101 (74%)
Frame = +2
Query: 254 FALEQSVQASGSEAHPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNL 433
+ L+ V A E HPP PW+H+G F+S+DH S+RRG++VY+QVC ACHS+ +AFR+L
Sbjct: 19 YLLQPDVHAEELELHPPKLPWSHNGVFNSIDHDSIRRGFQVYRQVCAACHSMNRLAFRHL 78
Query: 434 VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLP 556
V V +TEDE KA AAE + DGP+++G F RPGKLSD LP
Sbjct: 79 VGVCYTEDEMKAIAAEYDVVDGPNDQGEMFTRPGKLSDPLP 119
>SB_58357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 677 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 558
QSVARR N+ R +RS +SP G+ L H P G E
Sbjct: 9 QSVARRWNIHRIRPSTRSNSSPPGRRCFLYHYPEMTGGQE 48
>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
Length = 127
Score = 34.7 bits (76), Expect = 0.075
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 653 DYIFALLTGYMEPPAGVXL 709
DY+F LLTGY +PPAGV +
Sbjct: 1 DYVFHLLTGYADPPAGVEI 19
>SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)
Length = 404
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 677 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 558
QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 356 QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 395
>SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 677 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 558
QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 32 QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 71
>SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 677 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 558
QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 128 QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 167
>SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 677 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 558
QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 128 QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 167
>SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 686 PCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGMETAGSQKVY 534
PC Q + R C + +PS S+ + +G H C + + W T+ V+
Sbjct: 6 PCLQQL-RMCLQKPDVIPSVSQGANIGIHECKKQFKYERWNCSTSNDPTVF 55
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 616 DGCTDCNRNAPSQAATPPLPTSP 638
>SB_50798| Best HMM Match : CBS (HMM E-Value=2.8)
Length = 234
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTSP 195
>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
Length = 310
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +2
Query: 425 RNLVNVTHTEDEAKAEAA----EVMIKDGPDEEGNYFERPGKLSD 547
+N++N ++ EA A+ + E++ K+GP +G Y+ PG S+
Sbjct: 39 KNMMNANESDIEADADFSLFNREILDKEGPGPDGEYYIDPGSGSN 83
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 1157 DGCTDCNRNAPSQAATPPLPTSP 1179
>SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 73 DGCTDCNRNAPSQAATPPLPTSP 95
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 124 DGCTDCNRNAPSQAATPPLPTSP 146
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 635 DGCTDCNRNAPSQAATPPLPTSP 657
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 1249 DGCTDCNRNAPSQAATPPLPTSP 1271
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 790 DGCTDCNRNAPSQAATPPLPTSP 812
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 450 DGCTDCNRNAPSQAATPPLPTSP 472
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 846 DGCTDCNRNAPSQAATPPLPTSP 868
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 275 DGCTDCNRNAPSQAATPPLPTSP 297
>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 638
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 453 DGCTDCNRNAPSQAATPPLPTSP 475
>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
Length = 745
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT+P
Sbjct: 232 DGCTDCNRNAPSQAATPPLPTSP 254
>SB_16433| Best HMM Match : DUF1332 (HMM E-Value=5.4)
Length = 343
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 671 VARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 558
VARR N+ R +RS SP G+ L H P G E
Sbjct: 240 VARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 277
>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 364
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 282 DACTDCS-SAKSRAPTPP-PTTP 220
D CTDC+ +A S+A TPP PT P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTYP 195
>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
Length = 2022
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 248 LLFALEQSVQASGSEAHPPHNPWNHSGWFSSLDHA 352
++FALEQ + + +A PH W H + + ++ A
Sbjct: 1138 IVFALEQLQKITNQQACTPHEQWFHRAYSALIEKA 1172
>SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -2
Query: 241 NTSTYHSQSGQPHFSVFLSILECWWTADKPEAKLDHIFSKDVPHKSYRRWPP 86
N Y S S + V L E W DKP A LD+ + + YR PP
Sbjct: 402 NYGRYSSASDVWSYGVLL--FEIWSLGDKPYANLDNNEVVEAVSRGYRLPPP 451
>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
Length = 280
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 359 RRGYEVYKQVCKACHSLQYIAFRNL--VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFE 526
+R Y YK+ KAC +Y F+ L + + +DE A+ +K+ P + +Y +
Sbjct: 13 KRLYNNYKKSGKACDKEKYRKFQKLFKIKMKKAQDEYIADTLNSDLKEKPKKFWSYIK 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,277,492
Number of Sequences: 59808
Number of extensions: 479519
Number of successful extensions: 1679
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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