Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F06
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   6.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 26  GILAVDVILVVIFHYDGFQTWRPPSV 103
           G   V ++   I H+ G   W+PP++
Sbjct: 115 GNYEVTIMTKAILHHTGKVVWKPPAI 140


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 26  GILAVDVILVVIFHYDGFQTWRPPSV 103
           G   V  +   I HY G   W PP++
Sbjct: 115 GEYGVTTMTKAILHYTGKVLWTPPAI 140


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 26  GILAVDVILVVIFHYDGFQTWRPPSV 103
           G   V ++     +Y G   W+PP+V
Sbjct: 123 GNYEVTLMTKATVYYSGLVVWQPPAV 148


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 CQLSTNTQGWTKKQKSVAV 213
           CQ  T + GWT  ++S ++
Sbjct: 21  CQTFTYSHGWTNGKRSTSL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,737
Number of Sequences: 438
Number of extensions: 4198
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)