Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F03
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    77   3e-15
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    57   2e-09
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    29   0.76 
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   7.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   7.0  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    25   9.3  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 6/181 (3%)
 Frame = +3

Query: 261 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 440
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 441 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 617
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 618 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHXISFV----HKDGALYE 782
           G     R KL+E S+ +   H   A        S ED   + H I FV      D   YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175

Query: 783 L 785
           L
Sbjct: 176 L 176


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
 Frame = +3

Query: 264 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 443
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 444 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 623
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115

Query: 624 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHXISFVHKDGALYEL 785
               +G+ L  SE I   H   A+       +    + ED V +H I++ + +   YEL
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYEL 173


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +3

Query: 216 QLFYRVTEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSW 371
           Q+F   ++  +E  +PLES PD L K +        K+G    W I V V    PE   W
Sbjct: 312 QMFCYFSQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECW 371

Query: 372 V 374
           +
Sbjct: 372 L 372


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 180 KISTKIHN*IKNVPNCGVDEGD*SIKW*QLDKSNY 76
           K+  ++    K VPN  +D  D  I+W  L + N+
Sbjct: 626 KLKDQLTGEYKTVPNVAIDYRDHGIRWVTLGEQNF 660


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 555 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 731
           +NT+++   +  ++ K ++  K +D +  G  L + E    +H +    GQ      +DP
Sbjct: 31  SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84

Query: 732 VNHHXISFVHKDGALYE 782
            N+   SFV K+  LYE
Sbjct: 85  KNYQARSFV-KENELYE 100


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +3

Query: 669 INAHKELAQEGQTNTPSAEDPVNHH 743
           ++A + L ++ +++T + E+PV+HH
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHH 361


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 711 TPSAEDPVNHHXISFVHKD 767
           +P+AEDP+N    + +HKD
Sbjct: 132 SPNAEDPLNKEAAADLHKD 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,263
Number of Sequences: 5004
Number of extensions: 66097
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)