Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_F02
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 38 0.001
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 3.2
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.2
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 27 3.2
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 26 4.2
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 26 4.2
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 25 9.7
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 415 EPTYHFKVLVPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKS-HDFYPGTMERACLITGS 591
+P + +P+ + G IIG+GG I+++++ +G+ + ++K HD T ER ITG+
Sbjct: 318 QPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHD---ETGERMFTITGT 374
Query: 592 VE 597
E
Sbjct: 375 HE 376
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +1
Query: 442 VPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMERACLITGSVEGIMVVLDF 621
+P+ + IIG GG I +++K + + ++ PG + ++ GS G++ D
Sbjct: 1214 IPTNLHRRIIGSGGSIINKIRKIAQVKIDVPRT----PG--DEIVVVQGSRAGVVKAKDL 1267
Query: 622 IMEKIK 639
I E+++
Sbjct: 1268 IFERLQ 1273
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 353 KTW*PRCLWPTAMALLRLISWSRHTTSRYWCHR 451
K W CL P + A I+W H S Y+ R
Sbjct: 240 KDWRLLCLLPASFASQSTIAWQSHLNSYYFSLR 272
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -1
Query: 455 TIDGTSTLKWYVGSTK*DVIEPWPLARGNAVTKSCTELKCDLLTSPFSESPSRGRFLESV 276
+ D + T +W V ++ I W L G+ + T C LT +P+ +
Sbjct: 577 SFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTF----APTGDYLATTH 632
Query: 275 ISGLGQVSIPVSAAMLKFQS-KTLNLSSIIPIT 180
+ +G +S+ + +M K S K L L ++ ++
Sbjct: 633 VDQVG-ISLWTNLSMFKHVSTKALRLDDVVEVS 664
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 376 LANGHGSITSHFVEPTYHFKVLVPSMVAGAIIGKGGETIAQLQKDTGAXV 525
+A G +++ F E YH K++ ++A ++ + ++QK+ G V
Sbjct: 10 IATGKSTVSREFQEK-YHIKIIDADVLARKVVEPNTPCLIKIQKEFGNEV 58
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 486 LPALADDRASHHRWHQYLEVVCRLHEMRRNRAMAV 382
L LA A W L + CRLH++R ++V
Sbjct: 103 LGTLAGGAADCQFWETVLGMECRLHQLRNKELISV 137
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 547 FYPGTMERACLITGSVEGIMVVLDFIMEKIKXKPE 651
F+P E L+TGSV+G++ +LD E+ PE
Sbjct: 154 FHPKDNE--LLLTGSVDGLVSLLDTTKEEDSTDPE 186
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 7.3
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -1
Query: 476 LPMIAPATIDGTSTLKWYVGSTK*DVIEPWPLARGNAVTKSCTELKCDLLTSPFSESPSR 297
L I +I STLKW G+T DV++ + A+ S L + + +S +
Sbjct: 512 LKNIPEQSISRLSTLKWNEGTTIKDVLKQTEFSFDGAIISSVENLAEEEIELQNIKSQLQ 571
Query: 296 GRFL--ESVISGLGQVSIPVSAAM 231
L ES+ S + S+ +S A+
Sbjct: 572 DCALGCESINSTINLFSLELSTAL 595
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 355 DLVTALPLANGHGSITSHFVEPTYHFKV 438
++ A P+A G + + F++P + F V
Sbjct: 131 EMAVAYPVAGGFNTYATRFIDPAWGFAV 158
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 394 SITSHFVEPTYHFKVLVPS 450
S + H EPT HF + VPS
Sbjct: 322 SFSPHIREPTIHFVLYVPS 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,539
Number of Sequences: 5004
Number of extensions: 55742
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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