Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_F02
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        91   6e-19
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)                   43   3e-04
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)                   33   0.16 
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 31   0.83 
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)                29   4.4  
SB_23703| Best HMM Match : TTL (HMM E-Value=0)                         28   5.9  
SB_51790| Best HMM Match : TTL (HMM E-Value=0)                         28   5.9  
SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)                    28   5.9  
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 39/73 (53%), Positives = 58/73 (79%)
 Frame = +1

Query: 433 KVLVPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMERACLITGSVEGIMVV 612
           K+LVP+  AG+IIGKGG+ IAQ+Q+ TGA +K+S ++ +YPGT ER  LI G VE I+ +
Sbjct: 15  KILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQM 74

Query: 613 LDFIMEKIKXKPE 651
           LDF+++KI+ +P+
Sbjct: 75  LDFVIDKIRQEPQ 87



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/89 (31%), Positives = 52/89 (58%)
 Frame = +1

Query: 373 PLANGHGSITSHFVEPTYHFKVLVPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKSHDFY 552
           P+A    + TS  ++ +   ++ VP  + GAI+GKGG+TI +  + +GA +++S+  +F 
Sbjct: 255 PMAPPTSTATSSSIQSSATLEITVPDELIGAILGKGGKTITEFMQYSGARIQVSQKGEFV 314

Query: 553 PGTMERACLITGSVEGIMVVLDFIMEKIK 639
           PGT  R  +ITG V    +    + ++I+
Sbjct: 315 PGTSNRKVVITGDVPAAQLAHFLVTQRIQ 343



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = +1

Query: 415 EPTYHFKVLVPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMERACLITGSV 594
           E     K++VP+  AG IIGK G  I  + + TGA +++S+  D      ER   + GS 
Sbjct: 100 ERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQK-DAESVAGERIVCVGGSP 158

Query: 595 EGIMVVLDFIMEKIKXKPE 651
           E +      I  K+   PE
Sbjct: 159 EQVTAACVIITSKVPEDPE 177


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/68 (39%), Positives = 40/68 (58%)
 Frame = +1

Query: 433 KVLVPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMERACLITGSVEGIMVV 612
           ++ VP  V G +IGKGGETI ++Q ++GA V+ + + D  P + +R   + GS E I  V
Sbjct: 216 EIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKD-NPNSSDRMATVQGSQEQIQKV 274

Query: 613 LDFIMEKI 636
              I E I
Sbjct: 275 EKIINEII 282



 Score = 35.1 bits (77), Expect = 0.051
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 442 VPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKS 540
           VP    G IIGKGGETI Q+   +GA V+++++
Sbjct: 332 VPGNKCGLIIGKGGETIKQIIAVSGAHVELNRN 364


>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
          Length = 487

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +1

Query: 433 KVLVPSMVAGAIIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMERACLITGSVEGI 603
           +V +P  +AG+IIGKGGE I  ++    A +K+    D  PG+ +R   ITG+ E I
Sbjct: 324 QVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKID---DPLPGSNDRIITITGNQEQI 377



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 39/118 (33%), Positives = 56/118 (47%)
 Frame = +1

Query: 283 SRKRPLDGDSENGDVKRSHFSSVQDLVTALPLANGHGSITSHFVEPTYHFKVLVPSMVAG 462
           S KRP DGD  NG+VKR   SS  D       +N           PT   ++L+ S  AG
Sbjct: 25  SLKRPADGDY-NGNVKRMRESSDVD-------SNA----------PTT-LRILIQSKDAG 65

Query: 463 AIIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMERACLITGSVEGIMVVLDFIMEKI 636
            IIGKGG  I +L+ +  A V +  ++     + ER   IT   +  + +L  ++ KI
Sbjct: 66  GIIGKGGTNIRRLRTEYNAVVNVPDTN-----SNERVLTITAPRQSALDILAEVVPKI 118


>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 442 VPSMVAGAIIGKGGETIAQLQKDTGAXV 525
           VP+ V+G IIG+GG  I ++QK+TG  +
Sbjct: 62  VPASVSGVIIGRGGANIKKIQKETGTYI 89


>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
          Length = 379

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 418 PTYHFKVLVPSMVAGAIIGKGGETIAQLQKDTGAXV 525
           P    +++VP    G+IIGKGG  I ++++ +GA V
Sbjct: 87  PPVTLRLIVPGSQCGSIIGKGGAKIKEIREVSGASV 122


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 23/59 (38%), Positives = 26/59 (44%)
 Frame = +3

Query: 450 DGGWRDHRQGRGDHRSAAEGHRGXGQDVQVARLLSWYNGTRLSDHRLGGGDHGCVGLHY 626
           DG  RDH   R DH      H G  +D    R    + GTR  DH   G DHG  G +Y
Sbjct: 84  DGTRRDHGGTRRDHGGTRRDHGGTRRDHGGTR--RDHGGTR-RDHDGTGRDHGGTGGNY 139



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +3

Query: 480 RGDHRSAAEGHRGXGQDVQVARLLSWYNGTRLSDHRLGGGDHGCVGLHYG 629
           R DH S    H G G+D    R    + GTR  DH   G DHG  G  +G
Sbjct: 3   RRDHGSTRRDHGGTGRDHGGTR--RDHGGTR-RDHGGTGRDHGGTGRDHG 49



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 435 GTGAIDGGW-RDHRQGRGDHRSAAEGHRGXGQDVQVARLLSWYNGTRLSDHRLGGGDHG 608
           GTG   GG  RDH     DH      H G G+D    R    ++GTR  DH     DHG
Sbjct: 43  GTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTR--RDHDGTR-RDHGGTRRDHG 98



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = +3

Query: 453 GGWRDHRQGRGDHRSAAEGHRGXGQDVQVARLLSWYNGTRLSDHRLGGGDHGCVGLHYG 629
           G  RDH   R DH      H G G+D         + GT   DH   G DHG  G  +G
Sbjct: 15  GTGRDHGGTRRDHGGTRRDHGGTGRD---------HGGTG-RDHGGTGRDHGGTGRDHG 63


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 629 SIMKSNTTMIPSTEPVIRQARSIVPG*KSCDLDILTXAPVSFCS*AMVSPPLPMIAPATI 450
           S+++  TT  P   PV+ +A + VP     D       PV   +   V PP+   AP T+
Sbjct: 55  SVVEVTTTQAPPPPPVVTEAPTTVPPPVVTDAPTTVPPPVVTDAPTTVPPPVVTDAPTTV 114


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 466 IIGKGGETIAQLQKDTGAXVKMSKSHDFYPGTMER 570
           +IG+GG +I  ++  +GA +++ +   +  GT E+
Sbjct: 410 VIGEGGRSINSIRSQSGARIQIKEDKAYIRGTQEQ 444


>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
          Length = 329

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 426 PLQGTGAIDGGWRDHRQGRGDHRSAAEGHRGXGQDVQVARLLSWYNGTRLSDHRLGGGDH 605
           PL  TG +D  W+  +Q    +  A E H+   + + +A LL+     +L ++     + 
Sbjct: 9   PLNLTGNVDEAWKKFKQRFDLYIEAIEAHKKSDEHI-IALLLTVAGPEKLEEYCTPKKNE 67

Query: 606 GCVGLH 623
           G V +H
Sbjct: 68  GVVEVH 73


>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
          Length = 657

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 513 CVLLQLSDGLPALADDRASHHRWHQYLE 430
           CV+ +L DG P L  D      WH++ E
Sbjct: 3   CVVFRLCDGAPELLRDVCLERGWHEFDE 30


>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
          Length = 536

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 513 CVLLQLSDGLPALADDRASHHRWHQYLE 430
           CV+ +L DG P L  D      WH++ E
Sbjct: 3   CVVFRLCDGAPELLRDVCLERGWHEFDE 30


>SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)
          Length = 368

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = +1

Query: 310 SENG--DVKRSHFSSVQDLVTALPLANGHGSITSHFVEPTY----HFKVLVPSMVAGAII 471
           SE G  D  R  F  +  +   L   +      S ++E T     H K++      G ++
Sbjct: 5   SEGGTEDKHRRRFKRIHQVSHELGHEDSSSGSDSGYLELTSKHLSHVKIVTSGKPKGTVL 64

Query: 472 GKGGETIAQLQKDTGAXVKMSKSHDF 549
            + G+  AQ++ D+GA V +   + +
Sbjct: 65  VRLGDVDAQVEPDSGASVNVMDEYQY 90


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 460 GAIIGKGGETIAQLQKDTGA--XVKMSKSH 543
           G +IGKGG  I  + ++TGA   VK  K+H
Sbjct: 308 GMVIGKGGNRINSIGQETGAKIYVKDCKAH 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,046,904
Number of Sequences: 59808
Number of extensions: 458652
Number of successful extensions: 1202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)