Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E24
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    42   9e-05
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.2  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
 Frame = +1

Query: 388 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVXIMR 537
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 538 WVEGDDPAADHRXWAP 585
           W + DDP  +H   +P
Sbjct: 78  WEDDDDPLKEHITHSP 93



 Score = 30.7 bits (66), Expect = 0.16
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +1

Query: 451 PEQLARNGFYY---LGRGDEVCCAFCKVXIMRWVEGDDPAADHR 573
           P  +A +GF Y       D   C +C + +  W   DDP  +H+
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHK 184


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 28  RSSLXATRFCLAALTFWNFI 87
           + S+ A ++C+++ + WNFI
Sbjct: 566 QKSIRAIKYCVSSSSIWNFI 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,741
Number of Sequences: 5004
Number of extensions: 41511
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)