Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E24
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    29   2.4  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    29   2.4  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    29   2.4  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF273816-1|AAG15165.1|  274|Caenorhabditis elegans nuclear recep...    27   9.9  

>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 376 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 474
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 376 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 474
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 376 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 474
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 376 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 474
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 332 RQLIKRIITTHSTSFLICPTCVVKRNV*KHLISGPLRF*RRNNW 463
           RQL +R+   H T  L+C TC+  ++    L+  P  F  R  W
Sbjct: 513 RQLPERMEEWHQTFCLLCDTCMSDKS---FLVGIPHNFETRTKW 553


>AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3a protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 379 DMPDMRREEERLKTFDQWPVTFLTPE 456
           DM  MR+ +E  + FD W + F  PE
Sbjct: 368 DMLKMRQRQEISRVFDIWTIDFSHPE 393


>AF273816-1|AAG15165.1|  274|Caenorhabditis elegans nuclear receptor
           NHR-65 protein.
          Length = 274

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 379 DMPDMRREEERLKTFDQWPVTFLTPE 456
           DM  MR+ +E  + FD W + F  PE
Sbjct: 241 DMLKMRQRQEISRVFDIWTIDFSHPE 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,610
Number of Sequences: 27780
Number of extensions: 243888
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)