Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E21
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0981 + 26527005-26527260,26527457-26527770                       29   1.8  
03_02_0997 - 13094357-13094379,13094797-13095058                       29   1.8  
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    28   4.1  
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    27   9.5  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    27   9.5  

>06_03_0981 + 26527005-26527260,26527457-26527770
          Length = 189

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 72  AALAHGSRPRPAPSPP 25
           AALA   RPRP PSPP
Sbjct: 59  AALAGSGRPRPVPSPP 74


>03_02_0997 - 13094357-13094379,13094797-13095058
          Length = 94

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 72  AALAHGSRPRPAPSPP 25
           AALA   RPRP PSPP
Sbjct: 61  AALAGSGRPRPVPSPP 76


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 60  HGSRPRPAPSPPH 22
           HGSR  P PSPPH
Sbjct: 764 HGSRESPPPSPPH 776


>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 72  AALAHGSRPRPAPSP-PHTLLIGR 4
           + LA GSRPR  P P PH    GR
Sbjct: 33  STLAKGSRPRAPPRPAPHQYTTGR 56


>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 373  FVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSGC 269
            F+ +F++L   V  ++   L   W SLT LF  GC
Sbjct: 1930 FMVLFVELLADVFSVIQTALKIRWHSLTTLFLQGC 1964


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,490
Number of Sequences: 37544
Number of extensions: 182043
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)