Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E20
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...   262   3e-71
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.2  

>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score =  262 bits (643), Expect = 3e-71
 Identities = 122/200 (61%), Positives = 157/200 (78%)
 Frame = +3

Query: 198 RKEKXTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 377
           R+E  TFG + VP +K +GAQT RS+ NF IGG +ER+P P++ AFG+LK+AAA VN E+
Sbjct: 21  RQESDTFGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAFGVLKRAAASVNREF 80

Query: 378 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILGGK 557
           GL+ K+ADAI QA  +VI G+L  + +FPLV++QTGSGTQSNMN+NEVIANRAI+ILGG 
Sbjct: 81  GLDPKLADAIEQAAQEVIDGRL--DDNFPLVVFQTGSGTQSNMNSNEVIANRAIEILGGT 138

Query: 558 LGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLVALRDTLQAKSKDFERI 737
           LGSK PVHPNDHVN SQSSNDT+PT MHIA  +++   L+P +  L   L+ K ++F+ I
Sbjct: 139 LGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAMKHLHRALKGKEEEFKNI 198

Query: 738 VKIGRTHLMDAVPLTLGXEF 797
           +KIGRTH+ DA PL+LG EF
Sbjct: 199 IKIGRTHMQDATPLSLGQEF 218


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 497 LSTGASLPDDEGEVTLAVELPADDVIAGLHDRVGNFLFKSIFD 369
           LS+G SLP  E EVT +     DD +A     +     +S  D
Sbjct: 220 LSSGESLPKKEEEVTKSPSFTLDDSVASNEQTLAQLNIESPVD 262


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 543 ILGGKLGSKDPVHPNDHVNKSQSS 614
           +L   LG+ D  HP++H+ +++SS
Sbjct: 11  LLANTLGNNDENHPSNHIARAKSS 34


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  DAFCXVHFLVKFSVTSLXQNXQXWL-HPXSNFLHL*LT 125
           D  C  HF V+F+  SL      WL +  S++ H  LT
Sbjct: 134 DLLCSHHFSVEFTSISLIIKSSQWLFYTLSDYAHESLT 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,400
Number of Sequences: 5004
Number of extensions: 55825
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)