Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_E20
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 231 4e-61
08_01_0421 - 3735155-3736067,3736154-3736176 31 1.4
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 31 1.4
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 30 2.5
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 3.2
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 29 3.2
03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766 29 4.3
03_02_0177 - 6185091-6185355,6185468-6185524,6185725-6186089,618... 28 7.5
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 7.5
10_02_0199 + 6668902-6669293,6669825-6669882 28 9.9
07_01_0130 - 963856-965454 28 9.9
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 28 9.9
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 231 bits (566), Expect = 4e-61
Identities = 116/182 (63%), Positives = 137/182 (75%), Gaps = 1/182 (0%)
Frame = +3
Query: 198 RKEKXTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 377
R+E+ TFG + VP+DKL+GAQT RS+ NF IGG ERMP P+I AFG+LKK AAKVN+EY
Sbjct: 43 REERDTFGPIRVPNDKLWGAQTQRSLQNFDIGGERERMPVPIIRAFGVLKKCAAKVNMEY 102
Query: 378 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILGGK 557
GL+ I AIMQA +V G+L + HFPLVIWQTGSGTQSNMN NEVIANRA +ILG K
Sbjct: 103 GLDPTIGKAIMQAAQEVAEGQL--DDHFPLVIWQTGSGTQSNMNANEVIANRAAEILGHK 160
Query: 558 LGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLVALRDTLQAKSK-DFER 734
G K VHPNDHVN+SQSSNDT+PT MHIA A E+ R +P L L +L +K K +R
Sbjct: 161 RGEKF-VHPNDHVNRSQSSNDTFPTVMHIAAATEINSRFVPSLQQLHKSLDSKVKYGIDR 219
Query: 735 IV 740
IV
Sbjct: 220 IV 221
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 497 VQHEHERGDCEP--RHTNTGRETGQQGPGASQRPREQVAELER 619
V H+H RGD P R+ N G E QQ P + Q PR+QV R
Sbjct: 73 VHHDH-RGDYPPDQRYGNGGEEARQQQP-SWQPPRDQVTHHPR 113
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 615 NDTYPTAMHIAVAMELRDRLMPGLVALRDTLQAKSKDFERI 737
N++ + ++A DR+ G+ AL D L+A +DF+RI
Sbjct: 251 NESSIASYNVACCYSKLDRIQAGISALEDALKAGYEDFKRI 291
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 162 NKRNISTTSVTARKEKXTFGELDVPDDKLYGAQTV 266
N IST+S A+K+ ELDVPD+ G +
Sbjct: 352 NDGRISTSSTDAQKDSTHVDELDVPDNNAKGKSLI 386
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 624 TCRSSSATCSRGRWDAPGPCCPVS 553
+C +S +C RGRW AP C P +
Sbjct: 31 SCTTSCRSCGRGRWRAPA-CSPAA 53
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 575 RVLAAQFPAQYLYGAVRNHL-VRVHVGLSTGAS-LPDDE 465
++ PA++ YG VR+++ R G + AS +PDDE
Sbjct: 58 KIYMYDLPAKFTYGVVRSYMAARARAGAAGAASAIPDDE 96
>03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766
Length = 362
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 455 SLPPRHLADWLRYSVQHEHERGD-CEPRHTN 544
S P + DWLRY++QH + C P H++
Sbjct: 108 SATPEQINDWLRYAMQHTIKTFKLCSPYHSS 138
>03_02_0177 -
6185091-6185355,6185468-6185524,6185725-6186089,
6186180-6186332,6186422-6186655,6190532-6190978,
6191549-6191652,6192240-6192351
Length = 578
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = -3
Query: 796 NSWPSVSGTASIRWVLPILTILSKSLLLACSVSLRATRPGMSLSRSSMATAMCMAVGYVS 617
NSW ++ T+ I+ + +LT + C SL + G S+ S+ C V
Sbjct: 165 NSWLEIAITSGIKELTLVLTSNEEKYNFPC--SLLSNESGDSI--QSLRLVHCSFCPTVG 220
Query: 616 FELCDLFTWSLGCTG-SLLPSFPPSICMARFAITSFVFMLD*VPEPV 479
L F GC G +L S P++C F F L+ EPV
Sbjct: 221 LRLS--FLGVFGCFGLQMLESKAPNLCSFHFEGKQAQFSLE---EPV 262
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 312 ACVPQFHRSGSSSPNARSARHIACHLARPAP 220
A P+ HR G ++P R RH A P P
Sbjct: 10 AATPRRHRHGPATPRRRRRRHAAAVATPPPP 40
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 440 ALPRGSLPPRHLADWLR 490
A PR LPP HL WL+
Sbjct: 118 ATPRPGLPPHHLPSWLK 134
>07_01_0130 - 963856-965454
Length = 532
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 360 KVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQT 482
+V + + ++K+ MQ DV+SG++ +G F +V+W++
Sbjct: 457 RVGVAHEEDQKVPKIDMQ---DVLSGRVAPDGRFDVVLWRS 494
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 360 WRLLSLVYRKRQSRDKACVPQFHRSGSSSPNARSARHIA 244
WR LV + +Q + PQ + +SSP A+SA +A
Sbjct: 307 WRTQPLVVQPQQYNIQQVPPQLVQQQTSSPQAQSAPQVA 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,277,435
Number of Sequences: 37544
Number of extensions: 439036
Number of successful extensions: 1390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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