Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_E20
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase prot... 304 4e-83
AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase prot... 91 1e-18
U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical p... 30 1.7
Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical p... 30 1.7
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 29 5.1
AL110501-8|CAI06051.1| 175|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81526-7|CAB04266.2| 330|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase protein
1, isoform a protein.
Length = 501
Score = 304 bits (747), Expect = 4e-83
Identities = 151/217 (69%), Positives = 171/217 (78%), Gaps = 3/217 (1%)
Frame = +3
Query: 156 LINKRNISTTSVTA---RKEKXTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVI 326
L RN S T+V RKE+ TFGEL+VP DK YGAQT RS MNF IGG EERMP PVI
Sbjct: 25 LATARNFSRTTVPMAKIRKERDTFGELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVI 84
Query: 327 VAFGILKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNM 506
AFGILKKAAA VN E+GL+KK+ADAI QA D+V+ GKL + HFPLV WQTGSGTQSNM
Sbjct: 85 HAFGILKKAAALVNTEFGLDKKLADAISQAADEVVDGKL--DEHFPLVTWQTGSGTQSNM 142
Query: 507 NTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGL 686
N NEVI+NRAI+ILGG+LGSK PVHPNDHVN SQSSNDT+PTAMHIAV E+ RL+P L
Sbjct: 143 NVNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPAL 202
Query: 687 VALRDTLQAKSKDFERIVKIGRTHLMDAVPLTLGXEF 797
LR L K+++F+ I+KIGRTH DAVPLTLG EF
Sbjct: 203 KKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEF 239
>AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase protein
1, isoform b protein.
Length = 328
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = +3
Query: 603 SQSSNDTYPTAMHIAVAMELRDRLMPGLVALRDTLQAKSKDFERIVKIGRTHLMDAVPLT 782
SQSSNDT+PTAMHIAV E+ RL+P L LR L K+++F+ I+KIGRTH DAVPLT
Sbjct: 2 SQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTALHNKAEEFKDIIKIGRTHTQDAVPLT 61
Query: 783 LGXEF 797
LG EF
Sbjct: 62 LGQEF 66
>U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical
protein T13A10.2 protein.
Length = 161
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 576 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 490
P PCC V + RG + P+ CSC Y
Sbjct: 93 PRPCCAVCHDSYASRGPKKPKVCSCLHTY 121
>Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +3
Query: 342 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 521
LKK +A N+ LEKK +IS K + ++ TGS + M+ ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663
Query: 522 IANRAIQILGGKLGSKDP 575
R G + SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681
>Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +3
Query: 342 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 521
LKK +A N+ LEKK +IS K + ++ TGS + M+ ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663
Query: 522 IANRAIQILGGKLGSKDP 575
R G + SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 500 QHEHERGDCEPRHTNTGRETGQQGPGASQ 586
+H ++ DCEP GRE G++GP +Q
Sbjct: 19 RHHYDYYDCEPERGPRGRE-GREGPRGAQ 46
>AL110501-8|CAI06051.1| 175|Caenorhabditis elegans Hypothetical
protein Y79H2A.12 protein.
Length = 175
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 573 PVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLV 689
PV+ + V SNDTYP + + A E DR + GL+
Sbjct: 89 PVYFSSQVASGYESNDTYPNFLGVKTAEE--DRFVIGLL 125
>Z81526-7|CAB04266.2| 330|Caenorhabditis elegans Hypothetical
protein F33H2.8 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 422 IAGLHDRVGNFLFKSIFDIDFGGCFL*YTESDNHG 318
+A H+R G FD F GC L Y + +G
Sbjct: 118 LANSHNRTGELFLVRSFDFLFAGCILFYYSTRQNG 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,332
Number of Sequences: 27780
Number of extensions: 332896
Number of successful extensions: 978
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -