Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E18
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.4  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   7.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.8  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 598 SSSLQRETTHRYDEETYXADSPST*NDTGSISGIPQ 705
           +S ++ +  HRY EE    D     +   ++S +PQ
Sbjct: 154 NSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQ 189


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 598 SSSLQRETTHRYDEETYXADSPST*NDTGSISGIPQ 705
           +S ++ +  HRY EE    D     +   ++S +PQ
Sbjct: 154 NSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQ 189


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 598 SSSLQRETTHRYDEETYXADSPST*NDTGSISGIPQ 705
           +S ++ +  HRY EE    D     +   ++S +PQ
Sbjct: 154 NSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQ 189


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -2

Query: 351 NVLGPASPAV---DPRGSSGFPRTDGRPPANAPG---GTTGN 244
           ++ GP  PA    D R   G     G  PA++PG   G TGN
Sbjct: 134 SLTGPVRPAACTPDSRVGYGSVGLVGGDPASSPGAAAGRTGN 175


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 603 IPSTRNNPQI*RGDIXS*LPINLKRYRLDFRHSSK 707
           + S +  P+I      S L I LK +RL  +H +K
Sbjct: 9   LKSRQKAPKIVNSKYNSILNIALKNFRLCKKHKTK 43


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 603 IPSTRNNPQI*RGDIXS*LPINLKRYRLDFRHSSK 707
           + S +  P+I      S L I LK +RL  +H +K
Sbjct: 9   LKSRQKAPKIVNSKYNSILNIALKNFRLCKKHKTK 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,311
Number of Sequences: 336
Number of extensions: 3220
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)