Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E18
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    28   1.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.6  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 281 RPSVRGKPELPRGSTAGLAGP--STLTASQLAAPLHPATRQR 400
           RP+V   P +P G+   L  P  ST++    +AP  P   +R
Sbjct: 30  RPAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPTRNKR 71


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 319  VNGRTCRS*YIDGVTTGGTSSSCYQTEGDSSSGPTTT 429
            V+  T  S   D V T  TSSS   T   SSS  TT+
Sbjct: 975  VSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSSTTS 1011


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 580 LRFKVYSSSLQRETTHRYDEETYXADSPST*NDTGSISGIPQRRNSXTGRR 732
           LRF   SSS         D E+   D P+T  DT + + +P+R N+   R+
Sbjct: 5   LRFSTPSSSPSAS-----DNESVHDDGPTTELDTFNTTDVPRRVNTTKARQ 50


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 586 FKVYSSSLQRETTHRYDEETYXADSPST*NDTGSISG 696
           F V+SS     T +  +     ++S ST N TGS+SG
Sbjct: 112 FGVFSSLANSVTGYASNYTQSSSNSTSTMNSTGSVSG 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,310
Number of Sequences: 5004
Number of extensions: 50979
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)