Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_E18
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 33 0.31
09_06_0193 - 21460365-21460679,21460781-21460931,21461030-214612... 30 1.6
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 30 2.2
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286... 29 3.8
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 29 3.8
11_06_0201 + 21178784-21179047,21179519-21180064 29 5.0
05_06_0282 + 26915249-26915881 28 6.6
04_04_1294 - 32424762-32426309 28 6.6
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 28 6.6
04_04_0234 - 23805383-23805502,23805652-23805733,23805820-238060... 28 8.8
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = -2
Query: 378 RGAASCDAVNVLGPASPAVDPRGSSGFPRTDGRPPANAPGGTTGNL 241
R AA DA V A+ A+ P GS G P D PPA+ G NL
Sbjct: 55 RHAARPDA-EVEPAAAAAIPPGGSGGLPHGDSPPPADVGGDRGKNL 99
>09_06_0193 -
21460365-21460679,21460781-21460931,21461030-21461267,
21461364-21461571,21461776-21461975,21462085-21462186,
21462617-21463967
Length = 854
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 261 LVRWPGVVHPSAGNQSFHGGQRPDLQVLV 347
LV W G PS GN SF G LQV++
Sbjct: 194 LVSWKGATDPSPGNFSFGGDPDRPLQVVI 222
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 261 LVRWPGVVHPSAGNQSFHGGQRPDLQVLV 347
+V W G PS GN S G D QVLV
Sbjct: 2552 IVSWKGPDDPSTGNFSLSGDPNSDFQVLV 2580
>04_04_1264 -
32227812-32228114,32228199-32228349,32228454-32228691,
32228786-32228996,32229077-32229270,32229334-32229450,
32229580-32230522
Length = 718
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 261 LVRWPGVVHPSAGNQSFHGGQRPDLQVLV 347
LV W G PS G+ S+H R +LQ +
Sbjct: 60 LVAWKGPNDPSTGDFSYHSDPRSNLQAFI 88
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 372 AASCDAVNVLGPASPAVDPRGSSGFPRTDGRPP 274
+A CDAV L P+SP R S P + +PP
Sbjct: 96 SAPCDAVGPL-PSSPVARSRSSGATPASAAKPP 127
>11_06_0201 + 21178784-21179047,21179519-21180064
Length = 269
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 426 GGGARAAVSLCLVA-G*RGAASCDAVNVLGPASPAVDPRGSSGFPRTDGRPPANAPG 259
GGG R +V+ A A A +LGP V PRG RT R PA A G
Sbjct: 62 GGGRRRSVAEFPAAEAVSSPAELPATQLLGPGGGGVSPRGWLALART--RAPAIAGG 116
>05_06_0282 + 26915249-26915881
Length = 210
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 342 GPASPAVDPRGSSGFPRTDGR-PPANAPGGTTGNLTG 235
G +P D G R GR PP PGG G L+G
Sbjct: 68 GRVTPLADGGGGGVLRRPPGRGPPPPGPGGHVGPLSG 104
>04_04_1294 - 32424762-32426309
Length = 515
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 333 SPAVDPRGSSGFPRTDGRPPANAPGGTTG 247
S + PRG+ FP TD P +A GG G
Sbjct: 32 SSELKPRGTIYFPITDDPPEPSAEGGAEG 60
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 261 LVRWPGVVHPSAGNQSFHGGQRPDLQVLV-H*RRHNWR 371
+V W G PSAG+ + G DLQ++V + R WR
Sbjct: 178 IVAWRGPNDPSAGDFTMGGDSSSDLQIVVWNGTRPYWR 215
>04_04_0234 -
23805383-23805502,23805652-23805733,23805820-23806088,
23806384-23806524,23806751-23806936,23807186-23807422,
23807505-23807720,23807816-23808146,23808257-23808369,
23808691-23808996,23809078-23809187,23810226-23810363,
23811230-23811497
Length = 838
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/63 (39%), Positives = 30/63 (47%)
Frame = -2
Query: 444 PVEVACGGGARAAVSLCLVAG*RGAASCDAVNVLGPASPAVDPRGSSGFPRTDGRPPANA 265
PV V CGGG AA V G G++S A+ V PA+ A + S D R A A
Sbjct: 9 PVVVCCGGGGAAAAR--RVDGGPGSSSRGAI-VAAPAAAAAAGKVSM-VSGDDPRVAAAA 64
Query: 264 PGG 256
GG
Sbjct: 65 GGG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,466,945
Number of Sequences: 37544
Number of extensions: 372149
Number of successful extensions: 1137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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