Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E10
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    31   0.27 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.5  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   4.4  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   5.8  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    26   5.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   7.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.6  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   7.6  

>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 632 GLWNVFALMNPGTTFCSKSCISKTSSARSVEL 537
           G W  +A  N GT++CSK C    S  R +++
Sbjct: 106 GYWGKYACQNCGTSYCSKGCEVIHSETRCMKV 137


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 697 GVWFGRHLATTLKGDV 650
           G+WFG HLATT + +V
Sbjct: 352 GLWFGNHLATTKRVNV 367


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +2

Query: 371 TVEFPVIMLNSILNSNCPRFSYKTRARRN 457
           T E P   LNS L S CP F  K   R N
Sbjct: 212 TTENPSFRLNSALISRCPVFVLKKLTRDN 240


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 676 NAVQTKHHKPTIKLPGTTQKPQLIVTAQPQK-PVKVANIQVLNPXTKVYSKP 828
           N   T H+K  +  PG T K  ++VT   +  P K+     +   T V S+P
Sbjct: 329 NGKDTLHNKELVYFPGKTVKKLMLVTEDNEAVPEKIGCEGFVCVVTDVQSEP 380


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 692 LVWTAFSDDVEGRRFRPFLPGLWNVFALMNPGT 594
           LV+    D V        +PGL N+ A +NP T
Sbjct: 247 LVYEVMKDKVHQPYRASLIPGLQNILATLNPDT 279


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 642 RAKTSPFNVVAKCRPNQTPQADDKVARDHAKTAANRDGPTA 764
           RA TSP   + + +  Q P          A + ANR  PTA
Sbjct: 514 RAMTSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTA 554


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 160 LKSEVYSNMDKKVDLLSLIESDTWTAPNELMEIFSMDQDYLDFLEESIPDFNICSENVSE 339
           + S + S M+   +LL   ++DTWT+   L      +Q+ ++F E      +I S+N S 
Sbjct: 67  ISSSLRSEMEMSNNLLKNTQNDTWTSTVGLS--VPENQEAMNFNEGPTGISSIASKNNSS 124

Query: 340 -TSK 348
            TSK
Sbjct: 125 ITSK 128


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 637 KNGRKRRPSTSSLNAVQTKHHKPTIK-LPGTTQKPQLIVTAQPQ-KPVKV 780
           KNG K+R   S  N+   KH   T + L G   K +  VT   + K VK+
Sbjct: 191 KNGDKKRKHVSKSNSKHAKHELRTNRMLDGENVKSETSVTDMERVKRVKI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,841
Number of Sequences: 5004
Number of extensions: 71879
Number of successful extensions: 253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)