Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E10
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    32   0.44 
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 613 ANTFHSPGKNGRKRRPSTS-SLNAVQTKHHKPTIKLPGTTQK 735
           A++ +SP  +   RRPS + + +   T HH+P  K+P T +K
Sbjct: 512 ASSKNSPQSSSNSRRPSLAHTASPAFTHHHEPDSKIPKTAEK 553


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 658 PSTSSLNAVQTKHHKPTIKLPGTTQKPQLIVTAQPQKPVKVANIQVLNPXTK 813
           PST+  +   T   KPT     TTQ+PQ + T +      V ++    P T+
Sbjct: 298 PSTTKTSTTTTA--KPTTTRSTTTQRPQTVATTEAPTTTTVEDVTTRAPRTE 347


>Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 116 KKNWKCFYAVSKSTGILIQYCRLFLT-IYCAAYGKVTT 6
           K  W+ FYA+   TGI I + +  +T IY    G ++T
Sbjct: 237 KLQWQMFYALVSQTGIPILFMQFPVTLIYITCLGNIST 274


>Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 116 KKNWKCFYAVSKSTGILIQYCRLFLT-IYCAAYGKVTT 6
           K  W+ FYA+   TGI I + +  +T IY    G ++T
Sbjct: 237 KLQWQMFYALVSQTGIPILFMQFPVTLIYITCLGNIST 274


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
 Frame = -2

Query: 416 CCSKSNSA*SLEIPLSEQVLLIALEV---SDTFSEHMLKSGIDSSRKSK*SWSMENISMS 246
           CC   N    L I     + L  LE+   SDTF E  ++ G+D  ++    WSME     
Sbjct: 98  CCKDINVFLKLWIIGCANINLKLLEINSNSDTFDEKAIRKGVDYLKQ---PWSMERTFEY 154

Query: 245 SFGAVHVSDSIRDNKSTFLSILEYTSLFNVTSTFM--NHN*IFSIKKNWKCFYAVSKSTG 72
            +       S       F S+ +      V +TF+  N   +F   +  +  Y ++KS G
Sbjct: 155 KYPTSRYLHS-----EDFRSLYDIQRNDGVRATFLCQNLRFLFVPARTLRYSYVLAKSAG 209

Query: 71  ILIQYCRLFL 42
               +  LFL
Sbjct: 210 -FCSFLALFL 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,175,737
Number of Sequences: 27780
Number of extensions: 412588
Number of successful extensions: 1161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)