Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E10
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.053
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   8.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 652 RRPSTSSLNAVQTKHHKPTIKLPGTTQKPQ 741
           R P T  +N  + K H P  K P TT +P+
Sbjct: 140 REPGTPRINFTKLKRHHPRYKRPRTTFEPR 169


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 VDLLSLIESDTWTAPNELMEIFSMDQ 273
           V +L    S++W A NEL + F ++Q
Sbjct: 300 VPMLQGFPSNSWVAINELQDSFWLEQ 325


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 VDLLSLIESDTWTAPNELMEIFSMDQ 273
           V +L    S++W A NEL + F ++Q
Sbjct: 268 VPMLQGFPSNSWVAINELQDSFWLEQ 293


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 625 HSPGKNGRKRRPSTSSLNAVQTKHHKPTIKLPGT 726
           H+   NG  R P ++S  +V+ +  K ++  P T
Sbjct: 315 HNGSNNGSPRSPESNSRCSVKREKIKISVSYPST 348


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 268 DQDYLDFLEESIPDFNICSENVSETSK 348
           D++ L F+E ++  FN+  EN +   K
Sbjct: 56  DENVLLFIECTMKKFNVVDENANFNEK 82


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +1

Query: 718 PGTTQKPQLIVTAQPQKPVKVANIQVLNPXTKVYSKPVES 837
           P    +PQ +V   PQ+    A  Q        Y+ P+ +
Sbjct: 99  PSAALQPQHVVYGNPQQQQLAAETQQQQQHNNGYASPMST 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,811
Number of Sequences: 438
Number of extensions: 4980
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)