Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_E07
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 140 2e-34
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 140 2e-34
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 1.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 4.8
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.3
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 8.4
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.4
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 140 bits (338), Expect = 2e-34
Identities = 64/120 (53%), Positives = 83/120 (69%)
Frame = +2
Query: 134 QNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 313
QNIRK +KDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 39 QNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRR 98
Query: 314 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 493
+ KID+HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 99 QRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 19 LRSLKLHHRLAASVXXCGXXQVWLDPNXINELANTNS 129
+ +L+ RLAASV CG +VW+DPN I+E++N NS
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 140 bits (338), Expect = 2e-34
Identities = 64/120 (53%), Positives = 83/120 (69%)
Frame = +2
Query: 134 QNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 313
QN+RK IKDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 39 QNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRR 98
Query: 314 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 493
+ KID+HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 99 QRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 19 LRSLKLHHRLAASVXXCGXXQVWLDPNXINELANTNS 129
+ +L+ RLAASV CG +VW+DPN I+E++N NS
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 198 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 296
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 110 SSQTPTPVQNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 250
S+ P ++++R +KD + +PV+V S A ++T G G
Sbjct: 133 STFPPEKLESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 459 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 367
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 598 FVFXSEGLQQFLLLGGNTFLAALACLLHFIAA 503
+V E +FLLLG F A + LLH +++
Sbjct: 50 YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 275 WLYLFSYQSHSDDPFYVLLCFCGHERGS 192
W Y+S D FY ++ F H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 CVPSSCIIGL-QPLXCXVVKXRCGWIQMXSMSSQTPTPVQNIRKXIKDGLVIKKPVAVHS 196
C+ + IG+ QP WI + + +++ RK L K VH
Sbjct: 233 CIAFTGAIGITQPKVLVAWASNFAWILGFITNKEIENSLESFRKHSNGNLSSPKIGGVHR 292
Query: 197 RARVRKNTEARRKGRHCGF 253
R V N ++ G + GF
Sbjct: 293 RDAVATNPQSPIPGFYHGF 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,917
Number of Sequences: 5004
Number of extensions: 38453
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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