Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_E07
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 157 5e-39
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 157 5e-39
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.17
03_02_0050 + 5272471-5274861 31 0.92
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524... 29 3.7
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 3.7
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 6.5
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 27 8.6
02_05_0067 + 25557975-25558553 27 8.6
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 157 bits (382), Expect = 5e-39
Identities = 72/120 (60%), Positives = 86/120 (71%)
Frame = +2
Query: 134 QNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 313
QNIRK +KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT AR+P K LW
Sbjct: 39 QNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRR 98
Query: 314 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 493
AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 99 MRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 25 SLKLHHRLAASVXXCGXXQVWLDPNXINELANTNS 129
SLKL RLA+SV CG +VWLDPN +NE++ NS
Sbjct: 3 SLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANS 37
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 157 bits (382), Expect = 5e-39
Identities = 72/120 (60%), Positives = 86/120 (71%)
Frame = +2
Query: 134 QNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 313
QNIRK +KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT AR+P K LW
Sbjct: 39 QNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRR 98
Query: 314 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 493
AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 99 MRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 25 SLKLHHRLAASVXXCGXXQVWLDPNXINELANTNS 129
SLKL RLAASV CG +VWLDPN +NE++ NS
Sbjct: 3 SLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANS 37
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 392 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 493
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 565 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 407
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>05_07_0333 -
29351372-29351665,29351786-29351928,29352374-29352434,
29352950-29353034,29353254-29353292,29353487-29353557,
29353640-29353735,29353869-29354017,29354106-29354175,
29354752-29354792,29354902-29354977
Length = 374
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 80 RCGWIQMXSMSSQTPTPVQNIRKXIKDGLVIKKPVA-VHSRARVRKNTEARRKGRHCGFG 256
R GW M +M Q P P N K K P+ S ++ + + GR G
Sbjct: 236 RSGWSDMDAMRRQVPPPAINAGSLAKQ----KSPIGHEQSTSKDAVFSSSTFLGRSSGSS 291
Query: 257 KRRGTANARMPQKE 298
+R +++R P E
Sbjct: 292 RRPAVSSSREPSTE 305
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 161 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 274
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 155 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 283
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 105 DXIWIQPHLXXTTXXNRGCKPMMQLEGTQPDTV 7
D WI PH T +R C M+ LEG DT+
Sbjct: 530 DIGWIAPHCP--TGPSRKCGGMLVLEGRAKDTI 560
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 428 HACS*THYPSPSCRVSGIDACQSSW 354
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,151,004
Number of Sequences: 37544
Number of extensions: 293671
Number of successful extensions: 792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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