Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E07
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   154   5e-38
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  154 bits (373), Expect = 5e-38
 Identities = 70/120 (58%), Positives = 86/120 (71%)
 Frame = +2

Query: 134 QNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 313
           Q+IR+ + DGL+I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW   
Sbjct: 39  QSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRR 98

Query: 314 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 493
                        AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 99  MRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 19  LRSLKLHHRLAASVXXCGXXQVWLDPNXINELANTNS 129
           + +L+L  RLA++V  CG  +VWLDPN ++E++  NS
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANS 37


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 566 PPSWRQYVPRGACVPP 519
           P SW QY P+G C+ P
Sbjct: 221 PNSWHQYQPKGTCIQP 236


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 519 RRHASAARNVLPPRRRNCCRPSLXKT 596
           RRHAS     +PP   NC +P+  +T
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRT 39


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 110  SSQTPTPVQNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 250
            SS   +  +N+R  + D   +K  V  H     R ++E R+K R  G
Sbjct: 1053 SSSDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,363
Number of Sequences: 27780
Number of extensions: 234253
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)