Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E06
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.8  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.4  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 376 TNIACLLHNKYDSRKSTSYVANGTQFAIQYGSG 474
           TN     +N Y    +  Y+++ T    Q+G+G
Sbjct: 246 TNSTTNCYNNYPYYSNMDYLSSSTMSHSQFGNG 278


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 235 PSPEPLSNYLDAQYYGVISIGTPP 306
           P P P+  +  A+Y+   + G PP
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPP 186


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 543  RRGRVGARACLRGRQVRRDPRDGLXH 620
            RRGR+G  A LR + V  D    + H
Sbjct: 2122 RRGRIGPYAYLRDQWVSFDDIGMIRH 2147


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 460 QYGSGSLSGFLSTDDVTV 513
           Q+G G  S +L  D VTV
Sbjct: 126 QFGVGFYSAYLVADKVTV 143


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 309 LRRRADTDNSVVLSIKII*QWF 244
           +RR+A+  NS+ LS + +  WF
Sbjct: 183 IRRKAELANSLGLSERQVKIWF 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,319
Number of Sequences: 336
Number of extensions: 2908
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)