Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E01
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   1.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   7.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   7.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   9.9  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 148 STDSLETSHSFCICASSSFIVNYICIY 68
           + D    +H FC   S  F VN  CIY
Sbjct: 333 NNDWFHENHHFCAGCSEVFNVNIPCIY 359


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 163 ALDPSSTDSLETSHSFCICASSSFIVNYI 77
           A+  SS+ S  +S SF   ASSSFI + +
Sbjct: 56  AISSSSSSSPLSSSSFTSPASSSFITSLV 84


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 31  DYYFFFSCEPLEYIY 75
           DY + F C P EY Y
Sbjct: 429 DYNYMFVCPPEEYTY 443


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 139 SLETSHSFCICASSSFI 89
           S+  SH F +CA SSF+
Sbjct: 628 SMFHSHKFILCARSSFL 644


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 204 PRPLPTVHLMLHLKRWTL 151
           P PLP+VH+  H+ +  L
Sbjct: 378 PTPLPSVHMNSHIAKGEL 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 885,069
Number of Sequences: 5004
Number of extensions: 12572
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)