Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E01
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    31   0.17 
04_01_0574 - 7450124-7450525,7450957-7451322                           29   0.92 
03_05_0014 - 19726111-19726815                                         27   2.1  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   3.7  

>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 282  LPRSTHRAARGENPTDARVFLHLVLLPRPLPTVHLMLHLKRWTLLQLIP*KLPT---PFA 112
            +P  T+RAA G  P      L  + +P P  T H   H +   L  L+P  LP+   P  
Sbjct: 2497 MPHGTYRAA-GAQPHAPSPHLQQLRMPSPYATSHGNQHQRPSILASLLPFVLPSSSNPSL 2555

Query: 111  SAPL 100
            +APL
Sbjct: 2556 TAPL 2559


>04_01_0574 - 7450124-7450525,7450957-7451322
          Length = 255

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 246 NPTDARVFLHLVLLPRPLPTVHLMLHLKRWTLLQLI 139
           +P   R+FLH V   RP   +HL + L   TL  L+
Sbjct: 185 DPETLRIFLHAVTCVRPSNAMHLSIRLGDATLHALV 220


>03_05_0014 - 19726111-19726815
          Length = 234

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 197 GRGSRTRCRKTRASVGFSPRAARC 268
           GR S  RCR+ R   G + RAARC
Sbjct: 118 GRVSLERCREARVRGGGALRAARC 141


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 191  GRGRGSRTRCRKTRASVGFSPRAA 262
            G GRGS T+C  T   VG  P  A
Sbjct: 1100 GHGRGSETKCAPTVVIVGAPPPPA 1123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,628,680
Number of Sequences: 37544
Number of extensions: 103797
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)