Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_E01
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 27 2.0
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 27 2.6
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 27 2.6
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 27 2.6
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 27 2.6
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81096-5|CAD54150.1| 507|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 25 7.9
Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical p... 25 7.9
Z78065-8|CAD54156.1| 507|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical p... 25 7.9
AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic ace... 25 7.9
AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical ... 25 7.9
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 231 RVFLHLVLLPRPLPTVHLMLHLKRWTL 151
RV + P P PTV+ LH++R TL
Sbjct: 214 RVVSYYKCCPEPYPTVNYYLHIRRRTL 240
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 204 PRPLPTVHLMLHLKRWTL 151
P P P VH LH++R TL
Sbjct: 213 PEPYPDVHFYLHMRRRTL 230
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 204 PRPLPTVHLMLHLKRWTL 151
P P P VH LH++R TL
Sbjct: 213 PEPYPDVHFYLHMRRRTL 230
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 204 PRPLPTVHLMLHLKRWTL 151
P P P VH LH++R TL
Sbjct: 213 PEPYPDVHFYLHMRRRTL 230
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 204 PRPLPTVHLMLHLKRWTL 151
P P P VH LH++R TL
Sbjct: 213 PEPYPDVHFYLHMRRRTL 230
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 825 CLKDTVDRMARGENPDVARL 844
>Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 594 CLKDTVDRMARGENPDVARL 613
>Z81096-5|CAD54150.1| 507|Caenorhabditis elegans Hypothetical
protein T09E8.1e protein.
Length = 507
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 410 CLKDTVDRMARGENPDVARL 429
>Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 592 CLKDTVDRMARGENPDVARL 611
>Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 650 CLKDTVDRMARGENPDVARL 669
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 825 CLKDTVDRMARGENPDVARL 844
>Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 594 CLKDTVDRMARGENPDVARL 613
>Z78065-8|CAD54156.1| 507|Caenorhabditis elegans Hypothetical
protein T09E8.1e protein.
Length = 507
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 410 CLKDTVDRMARGENPDVARL 429
>Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 592 CLKDTVDRMARGENPDVARL 611
>Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 650 CLKDTVDRMARGENPDVARL 669
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 285 CLPRSTHRAARGENPTDARV 226
CL + R ARGENP AR+
Sbjct: 450 CLKDTVDRMARGENPDVARL 469
>Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical
protein T09A5.3 protein.
Length = 538
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 198 PLPTVHLMLHLKRWTLLQLIP*KLPTPFAS 109
P PTV LHL+R T + LPT S
Sbjct: 233 PYPTVKFYLHLRRRTFYYVFNVVLPTLLVS 262
>AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-7 protein.
Length = 538
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 198 PLPTVHLMLHLKRWTLLQLIP*KLPTPFAS 109
P PTV LHL+R T + LPT S
Sbjct: 233 PYPTVKFYLHLRRRTFYYVFNVVLPTLLVS 262
>AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical
protein Y46D2A.2 protein.
Length = 326
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 1 DHC*FLKVNLDYYFFFSCEPL 63
DH L++ LDY++F + EP+
Sbjct: 152 DHIEPLQIGLDYWYFTASEPM 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,169,672
Number of Sequences: 27780
Number of extensions: 76611
Number of successful extensions: 218
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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