Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_E01
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   1.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   1.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   1.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   5.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   5.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 193 KRAREQNKMQKDXCVSWVLASRSSMR*TWEAC 288
           K+A  + ++++     WV+   SS R  W+ C
Sbjct: 63  KKALMKERIRQKAAGHWVIHPCSSFRFYWDLC 94


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 193 KRAREQNKMQKDXCVSWVLASRSSMR*TWEAC 288
           K+A  + ++++     WV+   SS R  W+ C
Sbjct: 63  KKALMKERIRQKAAGHWVIHPCSSFRFYWDLC 94


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 193 KRAREQNKMQKDXCVSWVLASRSSMR*TWEAC 288
           K+A  + ++++     WV+   SS R  W+ C
Sbjct: 63  KKALMKERIRQKAAGHWVIHPCSSFRFYWDLC 94


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 299 GGGEHASHVQRIELREARTQLTHXSFCILFCSLAL 195
           GGG   S V  + L    + L     CIL  +L L
Sbjct: 11  GGGGRLSSVLSLSLTSLASSLIFTILCILTLALTL 45


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 299 GGGEHASHVQRIELREARTQLTHXSFCILFCSLAL 195
           GGG   S V  + L    + L     CIL  +L L
Sbjct: 11  GGGGRLSSVLSLSLTSLASSLIFTILCILTLALTL 45


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 299 GGGEHASHVQRIELREARTQLTHXSFCILFCSLAL 195
           GGG   S V  + L    + L     CIL  +L L
Sbjct: 11  GGGGRLSSVLSLSLTSLASSLIFTILCILTLALTL 45


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 299 GGGEHASHVQRIELREARTQLTHXSFCILFCSLAL 195
           GGG   S V  + L    + L     CIL  +L L
Sbjct: 11  GGGGRLSSVLSLSLTSLASSLIFTILCILTLALTL 45


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -1

Query: 121 SFCICASSSFIVNYICIYILEVH 53
           + C+  S S  V  +C+Y  +++
Sbjct: 739 TLCVAISLSATVTLVCLYSPKIY 761


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -1

Query: 121 SFCICASSSFIVNYICIYILEVH 53
           + C+  S S  V  +C+Y  +++
Sbjct: 829 TLCVAISLSATVTLVCLYSPKIY 851


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,009
Number of Sequences: 438
Number of extensions: 1000
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)