Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_D23
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 86 3e-17
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 86 3e-17
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 82 4e-16
Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily ass... 27 9.8
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p... 27 9.8
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 85.8 bits (203), Expect = 3e-17
Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 5/236 (2%)
Frame = +3
Query: 3 HLTPFIDSNSILRVGGRLDNSPYDFNIKHPIVHCSKHALTKXXXXXXXXXXXXXXXXXXX 182
+L + D + + R+ R+ +S PIV +KH L +
Sbjct: 1688 NLNIYTDKDGLKRIRKRVKSSVLPAEAHEPIVIHNKHVLAELIMRETHEINGHLPELYTQ 1747
Query: 183 XXIRQSYWPLGGRNLSKTVVRNCLKCFRYRAQNVQ-PIMGQLPKTRTDLQFPFLNCSVDY 359
YW L ++ V+R+C+ C + A+ + P LP RT+ PF + +DY
Sbjct: 1748 KAASLKYWILCAGTVAAKVIRSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDY 1807
Query: 360 AGPILIADRKGRGCKLVKSYLCIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPR 539
GPI ++ K+Y+ I+ CL +A +EL+ ++ +I +L +R G P
Sbjct: 1808 LGPIAYKNKDTH----FKAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRVGVPE 1863
Query: 540 SIWSDNGTNF-VG---ACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 695
+I+SDN F +G ++ +++ + SF++ + I+F P +P G+ E
Sbjct: 1864 TIYSDNAQTFLLGEKILSEDVNSDITSETLTSFLATKDIEFRHITPLAPWQGGIYE 1919
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 85.8 bits (203), Expect = 3e-17
Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 5/236 (2%)
Frame = +3
Query: 3 HLTPFIDSNSILRVGGRLDNSPYDFNIKHPIVHCSKHALTKXXXXXXXXXXXXXXXXXXX 182
+L + D + + R+ R+ +S PIV +KH L +
Sbjct: 1688 NLNIYTDKDGLKRIRKRVKSSVLPAEAHEPIVIHNKHVLAELIMRETHEINGHLPELYTQ 1747
Query: 183 XXIRQSYWPLGGRNLSKTVVRNCLKCFRYRAQNVQ-PIMGQLPKTRTDLQFPFLNCSVDY 359
YW L ++ V+R+C+ C + A+ + P LP RT+ PF + +DY
Sbjct: 1748 KAASLKYWILCAGTVAAKVIRSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDY 1807
Query: 360 AGPILIADRKGRGCKLVKSYLCIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPR 539
GPI ++ K+Y+ I+ CL +A +EL+ ++ +I +L +R G P
Sbjct: 1808 LGPIAYKNKDTH----FKAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRVGVPE 1863
Query: 540 SIWSDNGTNF-VG---ACNELKGVLSNSDIASFMSQEGIDFNFSPPYSPHFNGLAE 695
+I+SDN F +G ++ +++ + SF++ + I+F P +P G+ E
Sbjct: 1864 TIYSDNAQTFLLGEKILSEDVNSDITSETLTSFLATKDIEFRHITPLAPWQGGIYE 1919
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 81.8 bits (193), Expect = 4e-16
Identities = 54/180 (30%), Positives = 77/180 (42%), Gaps = 1/180 (0%)
Frame = +3
Query: 33 ILRVGGRLDNSPYDFNIKHPIVHCSKHALTKXXXXXXXXXXXXXXXXXXXXXIRQSYWPL 212
+ R GRL + D +I P+ + L K +++ P
Sbjct: 802 LARCKGRLFHMSPDIDISQPVFIMPQSQLAKLLIWEAHGKYHTNEQQTMEATREKAWIPC 861
Query: 213 GGRNLSKTVVRNCLKCFRY-RAQNVQPIMGQLPKTRTDLQFPFLNCSVDYAGPILIADRK 389
R + K ++ C+KC RY RA P M +P R PF N +DY GP+
Sbjct: 862 LRRQVKK-IIGKCVKCQRYNRAPMKYPNMADMPSFRVRRSRPFENTGLDYFGPMTFRKED 920
Query: 390 GRGCKLVKSYLCIFVCLAVKAVHIELVTALSSEAYIAALKRFVSRRGKPRSIWSDNGTNF 569
G + C+ C + HIELV S++A+I A++RFVS RG P I SDN F
Sbjct: 921 G---STESCWGCVLSCATTRLTHIELVQQCSTKAFINAIRRFVSERGIPDRIVSDNAPQF 977
>Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical
protein D2089.3 protein.
Length = 268
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 585 RCKHQQNLSHCRTICCGACLDE 520
RC H ++ + C +CCG C+DE
Sbjct: 66 RCWHGESCASC--VCCGECVDE 85
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 585 RCKHQQNLSHCRTICCGACLDETRIF*EQLCT 490
RC+ + C+T+C +E F Q+CT
Sbjct: 369 RCRSNEKFEPCKTVCSDTKCNEEPRFCPQVCT 400
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 585 RCKHQQNLSHCRTICCGACLDETRIF*EQLCT 490
RC+ + C+T+C +E F Q+CT
Sbjct: 474 RCRSNEKFEPCKTVCSDTKCNEEPRFCPQVCT 505
>U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily
assigned gene nameprotein 345 protein.
Length = 439
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 348 SVDYAGPILIADRKGRGCKL-VKSYLCIFVCLAV 446
S Y G I+I DRKG+ KL V S + C+++
Sbjct: 134 STTYGGDIVIVDRKGKETKLAVNSANRLLKCISI 167
>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
protein R05D3.11 protein.
Length = 1327
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 225 DFCLLRASNSGVCELVRAVVQHVRDA 148
DFCL RA+ S EL A+VQ DA
Sbjct: 441 DFCLARANPSDDAELTYAIVQDRVDA 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,957
Number of Sequences: 27780
Number of extensions: 328736
Number of successful extensions: 829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -