Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D20
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   1.3  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    26   7.1  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   9.4  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 479 TFNGTMGT--CPIVNLPYVSIVTQVLYALVCIVGLLGNTLVIYVVLRYS 619
           T  GTMG     I+N PY   V+QVLY  +   G +G + V+ + L ++
Sbjct: 301 TIAGTMGHDFSSILNTPYGEPVSQVLYNNLGKRGAVGVSAVLIIALCFN 349


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 727 PLIKGHGRNKERYPDEEALVRDGQVYYVHVGDGLHLGVAQDNVYDEGVSEQAYNADQGVQ 548
           P+  G G  K  Y D E   R   V  + V D    G+  + V D     +AYNAD  ++
Sbjct: 169 PIDMGGGEGKCLYIDTEGTFRP--VRLLAVAD--RYGLNGEEVLDNVAYARAYNADHQLE 224

Query: 547 YLR 539
            L+
Sbjct: 225 LLQ 227


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 625 ADRHQHVHSKLGHRGR-VLPHRDTVPYY 705
           A+RH +V S  G RGR  +  RD+ P Y
Sbjct: 91  ANRHSNVSSSSGSRGRSSVSSRDSSPSY 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,723
Number of Sequences: 5004
Number of extensions: 61025
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)