Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_D19
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0420 + 23326905-23327231 31 1.3
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340... 31 1.3
03_01_0095 + 759530-760123 30 1.8
10_01_0313 + 3447065-3448204 30 2.3
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 29 3.1
01_01_0757 - 5840736-5842574 29 3.1
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 7.1
06_03_0335 + 19662933-19663334,19663358-19664023 28 9.4
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 28 9.4
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 28 9.4
01_01_0147 - 1332752-1333447,1333557-1333739 28 9.4
>11_06_0420 + 23326905-23327231
Length = 108
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +1
Query: 94 QAPLVHPKASQPXKLTSLPIKXP*LFGGSA*SPCCVPLDTCSRCLTIQCR 243
+A +V P P LT P P LFGG CC L + CL R
Sbjct: 33 EAAVVPPSRCNPTLLT--PCAGPALFGGPVPPACCAQLRAQAACLCAYAR 80
>01_06_0912 +
32933362-32933515,32933628-32933697,32933893-32934035,
32934127-32934637,32934693-32934729,32935254-32935350,
32936774-32937153
Length = 463
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = +2
Query: 542 PVAEHSPGRGACRDRAVPGRTYNGIVRSLRLDESVRILLLRDVEVRVAPEPVHPQHVPRA 721
PV E SPG A R A + +R R + ++ + V V P P Q V A
Sbjct: 164 PVDEDSPGEPASRSTAPLKKDLPRGLREERKKQQREVVKVVSKAV-VVPAPAPEQKVKGA 222
Query: 722 PRGRRRTHTXP 754
GR +HT P
Sbjct: 223 ASGRISSHTPP 233
>03_01_0095 + 759530-760123
Length = 197
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +2
Query: 557 SPGRGACRDRAV---PGRTYNGIVRSLRLDESVRILLLRDV--EVRVAPEPVHPQHVPRA 721
SPG G+ R + P +G LDES + V + P P HP+ PRA
Sbjct: 6 SPGAGSLRFLGLLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCCPAPPHPEGPPRA 65
Query: 722 PRGRRRTHTXP 754
P RR HT P
Sbjct: 66 P---RRAHTVP 73
>10_01_0313 + 3447065-3448204
Length = 379
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 204 IGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISLSREFM 341
+G+ FP +PV +F + A L H+ +P REI L E +
Sbjct: 80 LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGLRWEIV 125
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 579 EIVLFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTF 713
E L+ VL L+G+ G P +YY ++ SR++P TR TF
Sbjct: 280 ESKLYMTVLPDGLYGYVGSKPPQLYYTYLVDTNKSRKDP-TRVTF 323
>01_01_0757 - 5840736-5842574
Length = 612
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/112 (22%), Positives = 47/112 (41%)
Frame = -3
Query: 493 PRVSRIVKEYEAACSSANKKIGTNINKLGTTFMKMSE*NR*CALSSRKNLAMNSREREIS 314
P +S V E+ A C G +++ ++ E R C R N + S ++++
Sbjct: 98 PAISLAVLEWRATCR------GVQFDRIFGVWLGGVELLRSCTAEPRPNGIVWSVSKDVT 151
Query: 313 RAGIL*CSRSAEVAAFASNAL*NADTGLLNNGNTYPMVHSTVITRTPQRATA 158
R L + ++ +A + N + + TG+ + T + R P ATA
Sbjct: 152 RYASLLAAGNSTLAVYLGNLIDDQYTGVYHANITLHLYFGPTPARQPAPATA 203
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 357 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 458
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 653 LLLRDVEVRVAPEPVHPQHVPRAPRGRRR 739
LL R + +A P+H VPRAP RRR
Sbjct: 136 LLPRRLHRPLAARPLHVPGVPRAPGARRR 164
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 614 CHYKYDREQHDLGKRRGPENVPRLELDQGDEQTGHPQRILTKSIKDSQ 471
C Y+YD H+ + ++ P + D GDE ++ S +DS+
Sbjct: 320 CEYEYDIHWHNFKRLADIDDEPETKEDPGDEPYNAGNDYVSDSDEDSE 367
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 280 EVAAFASNAL*NADTGLLNNGNTYPMVHSTVITRTPQRAT 161
E A + N + DT +N+GNT P + T+ + TP + T
Sbjct: 961 EDIARSVNVVHVVDTTTVNSGNTEPSSYVTLFSNTPGKLT 1000
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 196 CVPLDTCSRCLTIQCRHSTKRYSRTLRLQRC 288
C PL+ ++ CR ST Y R +R C
Sbjct: 92 CRPLEKVLAAMSAPCRFSTSAYMRLIRASGC 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,873
Number of Sequences: 37544
Number of extensions: 411930
Number of successful extensions: 1395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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