Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_D19
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical... 144 8e-35
AL034364-4|CAA22250.2| 290|Caenorhabditis elegans Hypothetical ... 32 0.39
Z71185-12|CAA94906.3| 460|Caenorhabditis elegans Hypothetical p... 30 1.6
AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine re... 29 2.7
Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 29 3.6
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 29 4.8
AF039050-1|AAC47934.2| 344|Caenorhabditis elegans Seven tm rece... 29 4.8
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 29 4.8
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 8.4
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 8.4
AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical ... 28 8.4
>AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical
protein Y37D8A.17 protein.
Length = 271
Score = 144 bits (348), Expect = 8e-35
Identities = 77/208 (37%), Positives = 117/208 (56%), Gaps = 2/208 (0%)
Frame = +3
Query: 108 PPKGIPALXAHIIANKXAVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKALLANAATS 281
PP ++ ++ AN L+ RV+TV + Y+ P P SA+YK A+AAT
Sbjct: 31 PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90
Query: 282 ALRLHQRIPAREISLSREFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAA 461
ALRLH RI + +L+ +F+ R +EDS HYL YS++F+ P + +P+ ++A LHA
Sbjct: 91 ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149
Query: 462 SYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLFPVVLIMALFGHCGLMS 641
++ IL G S + +L Q++N L A +EI L P+++ + G L+
Sbjct: 150 TFMTKILRETGHTSSIIPKLE-QFTAHQTQNALGIIACSEIFLVPLLVSLIFSGKGSLLL 208
Query: 642 PFVYYYFVTWRYASRRNPYTRNTFRELR 725
PF YY F++ RYASRRNP TR F ++R
Sbjct: 209 PFAYYRFLSLRYASRRNPSTRQAFAQMR 236
>AL034364-4|CAA22250.2| 290|Caenorhabditis elegans Hypothetical
protein W06D4.2 protein.
Length = 290
Score = 32.3 bits (70), Expect = 0.39
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +3
Query: 336 FMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVA 515
F + F + YLF + +++ P + L P F+FALL T L +L + S ++A
Sbjct: 149 FSSTLFFGIFSGYLFGPRM-LSLAPTTIFLPP-FMFALLFDNGILPTPLVSLNRQSFFIA 206
Query: 516 RLLIS--LVEFQSRNILRAAALAEIVLFPVVLIMALFGHCGLMSPFV 650
IS + F + +L + ++ I LF +V + L+ H ++ FV
Sbjct: 207 FASISVFITTFLASIVLGSFSIV-ISLFNIVHVTGLYIHFQVIMQFV 252
>Z71185-12|CAA94906.3| 460|Caenorhabditis elegans Hypothetical
protein C35A5.3 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 413 FVNIGANLFICAATRCFVFLDYP*YSWSE 499
FV++G ++FI A F+F D P SW+E
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444
>AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine
receptor, class x protein5 protein.
Length = 306
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 381 YSLIFMNVVPNLLILVPIFLFALL--HAASYSLTILDTLGQ-NSLWVARLLISLVEFQSR 551
+ L F+++ NLLI +P+F FA ++ Y + + + L+VA SL R
Sbjct: 12 FCLSFVSICLNLLIFIPVFRFAFFGKRSSIYLIAFFNIISDLQQLFVACFHSSLSIIFGR 71
Query: 552 NILRAAALAEIVLF 593
+L A + +F
Sbjct: 72 YVLSGARINSFSVF 85
>Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical
protein C55A1.3 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 375 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 542
LFY+L+F ++P +L+ +P L L S+ L S+++ +L L F
Sbjct: 260 LFYALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFLYPILDPLPNF 315
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 381 YSLIFMNVVPNLLILVPIFLFALLHAAS--YSLTILDTLGQ-NSLWVARLLISLVEFQSR 551
+ L F+++ NLLI +P+F FA S Y + + + L+VA SL R
Sbjct: 12 FCLSFVSICLNLLIFIPVFRFAFFGKKSSIYLIAFFNIISDLLQLFVACFHSSLSIIFGR 71
Query: 552 NILRAAALAEIVLF 593
+L A + + +F
Sbjct: 72 YVLTGARINNLSVF 85
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 34 RCPSTHFNPLSSTWPXKISKQAPLVHPKASQPXKL 138
RCP HF W K++ +P+ +P L
Sbjct: 693 RCPFAHFQEFGEDWADKLNSYSPIKFTPIKKPDDL 727
>AF039050-1|AAC47934.2| 344|Caenorhabditis elegans Seven tm
receptor protein 247 protein.
Length = 344
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 375 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 542
LFY+L+F ++P +L+ +P L+ S+ + L S+++ +L L F
Sbjct: 245 LFYALVFQTLIPVILMHIPASFGFLVSIFGNSIQLFGQLPTFSIFLFPMLDPLPNF 300
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 34 RCPSTHFNPLSSTWPXKISKQAPLVHPKASQPXKL 138
RCP HF W K++ +P+ +P L
Sbjct: 693 RCPFAHFQEFGEDWADKLNSYSPIKFTPIKKPDDL 727
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
W02C12.1 protein.
Length = 1372
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 530 PGRVPVAEHSPGRGACRDRAVPGRTYNGI 616
PG++ +E + G C+D PG Y+ +
Sbjct: 971 PGQITASEGAISEGECKDNCPPGHQYDSL 999
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 71 HGRSKSASRRHWSTQRHPSLXSSHHCQ*NXRSSLGGPR 184
+GR ++SRR + Q+ PS S+ H N R+SL P+
Sbjct: 163 YGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 597 PGTARSRQAPRPGECSATGTRPGR*ADGPPTTNSDQEYQG 478
PGT + +P P + + G+ G + G TT+ + QG
Sbjct: 890 PGTTLTSTSPSPSQSTTIGSTQGSTSPGISTTSEEMTSQG 929
>AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical
protein Y68A4A.3 protein.
Length = 320
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 375 LFYSLIFMNVVPNLLILVP 431
LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,294
Number of Sequences: 27780
Number of extensions: 323847
Number of successful extensions: 1188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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