Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D19
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    33   0.003
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.44 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.58 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   5.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 21/40 (52%), Positives = 23/40 (57%)
 Frame = +2

Query: 584 RAVPGRTYNGIVRSLRLDESVRILLLRDVEVRVAPEPVHP 703
           R V G    GIVRSL LD+  RI+LL   E R   EPV P
Sbjct: 302 RGVRGTRVPGIVRSLVLDKLARIVLLNFQEER-RSEPVEP 340


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 59  PCXQHGRSKSASRRH-WSTQRHPSLXSSHHCQ*NXRSSLGGPRNHRAVYH 205
           PC +   S +  RRH  +    PS     +      SSL   RNH+++YH
Sbjct: 7   PCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 372 YLFYSLIFMNVVPNLLILVPIF 437
           +LF  LIF++V  N+L+ V I+
Sbjct: 30  FLFLILIFLSVAGNILVCVAIY 51


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 384 SLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISL 533
           S+I   V+ N+L+ V +FL   L      L +  +L  + L VA L++ +
Sbjct: 50  SIIVGTVIGNILVCVAVFLVRKLRRPCNYLLV--SLAVSDLCVALLVMPM 97


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 620 EQCHYKYDREQHDLGKRRGPENVPRLELDQGDE 522
           EQ  YK +RE    GK     +  R+E ++  E
Sbjct: 268 EQKSYKNEREYRKYGKTSKERSRDRMERERSKE 300


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 374 IVRAVLQEEPRHELPREGD 318
           +V  VLQ  P  EL + GD
Sbjct: 26  LVNTVLQPRPSFELSKNGD 44


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 374 IVRAVLQEEPRHELPREGD 318
           +V  VLQ  P  EL + GD
Sbjct: 28  LVNTVLQPRPSFELSKNGD 46


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 288 RLHQRIPAREISLSR 332
           RLH R+P R  +L R
Sbjct: 108 RLHSRLPGRNFNLLR 122


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 432 IFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLFPVVLIM 611
           +F+F  + A    L IL TLG     +  L I  V  Q    L   ++  IVL  ++ ++
Sbjct: 12  LFIFNFVFAVC-GLGIL-TLGV----LIHLQILGVSKQIETGLAFPSITLIVLGSIIFVI 65

Query: 612 ALFGHCG 632
           + FG CG
Sbjct: 66  SFFGCCG 72


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 602 TYNGIVRSL-----RLDESVRILLLRDVEVRVAPEP 694
           T NGIV++       L  S+RILL R +++   P P
Sbjct: 795 TPNGIVKTWIAHDRYLPNSLRILLKRFLDITTPPTP 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,600
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)