Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_D12
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 1.0
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 27 4.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 4.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 5.5
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 5.5
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 7.2
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 7.2
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 9.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 9.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 9.5
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 222 LLKSFTDKYGDVFRVHFFSYPYVLISHPKYAEALVSSADLITK-GRSYSFLKA 377
LLK F D YGD+ F Y + PK V LI+ G Y+ LK+
Sbjct: 426 LLKCFFDAYGDIIVSPFKDMIYSVFECPKTLTQAVQQDTLISSFGVGYTQLKS 478
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 411 PRWRLHRKFLTPAFHFNILQNFLPVFCKNSEILRDKIRRLADGQPI 548
P+WRL ++ TP + +NF+ + K L ++ D P+
Sbjct: 2 PKWRLTKEDFTPKGMWRNFKNFIVIEAKPGTTLAERFLTNEDLYPV 47
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 216 LGLLKSFTDKYGDVFRVHFFSYPYVLIS 299
LGL S+T+KY ++ + FS PY++I+
Sbjct: 2130 LGL--SYTEKYPGIYHIEIFS-PYIIIN 2154
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 5.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 267 HFFSYPYVLISHP 305
HF+SYP+ + HP
Sbjct: 172 HFYSYPFFFVDHP 184
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +2
Query: 290 INIPSKVCRGFGFKCRFDNKRTIVLI 367
I++ + +C+G+GF C + K ++ I
Sbjct: 329 IDMETNLCKGYGFACFEEEKSALICI 354
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 PLPIIGNAHQFVVRSTEFLGLLKSFTDKYGDVFRVHFFSYPYVLISHPKYAEALVSSA-D 338
P P+ + HQ + +G + F D Y D F + P LISHP Y+ + + + D
Sbjct: 243 PSPLSLHFHQDYYHNLHRVGAFEPF-DPYYDTFFL-----PMPLISHPLYSSSWIPTLHD 296
Query: 339 LIT 347
L++
Sbjct: 297 LVS 299
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 150 PGPFPLPIIGNAHQFVVRSTEF 215
P PF LPI+ F R TEF
Sbjct: 742 PSPFSLPIVTTIQYFCDRFTEF 763
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 457 KWKAGVKNLRCSLHLGPEA---VRRPSPSQAFKNEYDRPFVIKSAL 329
K KA +RC + + P V ++AF EY P +IK+A+
Sbjct: 150 KTKARAIAIRCGVPVVPGTPGPVEHYEEAEAFVKEYGLPVIIKAAM 195
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 326 FKCRFDNKRTIVLIFESLAG*RSPYSFRPQVETTSQILDAGLPFQHIAEFSACVLQKFGD 505
F+C F+N RT+ ++S S +P + S++ D + F + + F K D
Sbjct: 564 FRCDFENVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRFEYEKESKRSD 623
Query: 506 ITRQNTTSR*WTTHRFV 556
I T H+F+
Sbjct: 624 IVCICTNDANVDKHKFL 640
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 150 PGPFPLPIIGNAHQFVVRSTEFLGLLKSFTDKY 248
P P+ PI+GN+ V ++ +L TD Y
Sbjct: 411 PFPWMSPIVGNSMVTVANGHNWMCILNYLTDSY 443
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 444 PAFHFNI-LQNFLPVFCKNSEILRDKIRRL 530
P+F + + LQNFLPVF LR I R+
Sbjct: 396 PSFSYCLELQNFLPVFNAQDPNLRYDIARM 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,427
Number of Sequences: 5004
Number of extensions: 75370
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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