Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D09
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)                       27   3.1  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   4.1  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         26   7.2  
SB_49650| Best HMM Match : RVT_1 (HMM E-Value=1.3)                     25   9.5  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         25   9.5  
SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)                  25   9.5  
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)            25   9.5  

>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
          Length = 132

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 167 QNTNXCKNPNKCYQQSAITFMMLCRICKXPSVRDGKXPDCMRLXKKRF 24
           ++T   ++P  C QQSA T ++  R    P+++    P       +RF
Sbjct: 8   RDTTRTRSPKVCTQQSAATQLIFNRRVSTPTLKSQMVPPFTCFCDRRF 55


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  FHPLHLVSYKCGKAS*KLWHSAGSTCLGSCXC 157
           +H LHL+ +  G +  K W    + C G+  C
Sbjct: 78  YHTLHLMCWDLGLSVCKFWIFVDALCSGASIC 109


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 209 SYLPYIXXXXXXLHQNTNXCKNPNKCYQQSAITFMM 102
           S LP+I         + N C NP KC +  A+ F++
Sbjct: 681 STLPFIVSQVQSFPTSNNMCLNPTKC-KVMAVDFLL 715


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 183 IAITASKYQXLQEPKQVLPAECHNFYDALPH 91
           +++++SK+  ++   QV PAE +N+ DA+ H
Sbjct: 506 LSVSSSKWVDIE---QVRPAELNNYLDAMRH 533


>SB_49650| Best HMM Match : RVT_1 (HMM E-Value=1.3)
          Length = 379

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 209 SYLPYIXXXXXXLHQNTNXCKNPNKCYQQSAITFM 105
           S LP+I         + N C NP KC +  A+ F+
Sbjct: 152 STLPFIVSQVQSFATSNNMCLNPTKC-KVMAVDFL 185


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 209 SYLPYIXXXXXXLHQNTNXCKNPNKCYQQSAITFM 105
           S LP+I         + N C NP KC +  A+ F+
Sbjct: 648 STLPFIVSQVQSFATSNNMCLNPTKC-KVMAVDFL 681


>SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)
          Length = 554

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 209 SYLPYIXXXXXXLHQNTNXCKNPNKCYQQSAITFM 105
           S LP+I         + N C NP KC +  A+ F+
Sbjct: 306 STLPFIVSQVQSFATSNNMCLNPTKC-KVMAVDFL 339


>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
          Length = 599

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 209 SYLPYIXXXXXXLHQNTNXCKNPNKCYQQSAITFM 105
           S LP+I         + N C NP KC +  A+ F+
Sbjct: 372 STLPFIVSQVQSFATSNNMCLNPTKC-KVMAVDFL 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,217,089
Number of Sequences: 59808
Number of extensions: 90670
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)