Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D09
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    26   4.7  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    26   4.7  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    26   4.7  
U53154-1|AAC25854.1|  382|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z49068-3|CAA88862.1|  650|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 QNTNXCKNPNKCYQQSAITFMMLCRICK 84
           +N+  CK  N C  + ++    LCR C+
Sbjct: 70  KNSPKCKYKNHCRLEKSVNAKRLCRSCR 97


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 QNTNXCKNPNKCYQQSAITFMMLCRICK 84
           +N+  CK  N C  + ++    LCR C+
Sbjct: 70  KNSPKCKYKNHCRLEKSVNAKRLCRSCR 97


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 QNTNXCKNPNKCYQQSAITFMMLCRICK 84
           +N+  CK  N C  + ++    LCR C+
Sbjct: 70  KNSPKCKYKNHCRLEKSVNAKRLCRSCR 97


>U53154-1|AAC25854.1|  382|Caenorhabditis elegans Hypothetical
           protein C33G8.7 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 140 NKCYQQSAITFMMLCRICKXPS 75
           +K  Q++ I + MLC+IC  PS
Sbjct: 32  SKLNQRTNIFYAMLCKICDGPS 53


>Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical
           protein K01C8.3b protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 131 STCLGSCXCWYFDAVIAIMLICKAN 205
           ST LG+  C  FD +  I  ICK N
Sbjct: 317 STTLGTTSCCSFDVLSEIGPICKEN 341


>Z49068-3|CAA88862.1|  650|Caenorhabditis elegans Hypothetical
           protein K01C8.3a protein.
          Length = 650

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 131 STCLGSCXCWYFDAVIAIMLICKAN 205
           ST LG+  C  FD +  I  ICK N
Sbjct: 317 STTLGTTSCCSFDVLSEIGPICKEN 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,562,801
Number of Sequences: 27780
Number of extensions: 68074
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)