Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D06
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    62   4e-11
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    61   7e-11
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    27   0.80 
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   5.6  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    25   5.6  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    24   7.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    24   9.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/51 (58%), Positives = 39/51 (76%)
 Frame = +1

Query: 97  RRGGKTPNRSK*RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGL 249
           RR   T  R K + T ++VKFK+RCS++LYTLV+ D +KAEKL+QSLPP L
Sbjct: 16  RRKDATSARIK-KNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDL 65



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +3

Query: 57  MPREIKDIKDFLIKARRKDAKSVKIKKN 140
           MPR+I DIK FL  ARRKDA S +IKKN
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKN 28


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 60.9 bits (141), Expect = 7e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = +1

Query: 100 RGGKTPNRSK*RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGL 249
           RG  T  R K +   + VKFK+RCSR+LYTLV+ D +KAEKL+QSLPP L
Sbjct: 17  RGDATSARVK-KNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPAL 65



 Score = 35.5 bits (78), Expect = 0.003
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 57  MPREIKDIKDFLIKARRKDAKSVKIKKN 140
           MPR++ DIK FL  A R DA S ++KKN
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKN 28


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 161 LNLTFCRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 54
           +  T CR L    +F VF   L+   FD+ D+ +HV
Sbjct: 15  ITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 140 VLLYFDRFGVFPPRLN*KVFDIFD 69
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  HSAG*KLF-VFNMPREIKDIKDFLIKARRKD 113
           H+   +LF V    R IKD+KD   KA  KD
Sbjct: 286 HTVREQLFEVKEFTRSIKDLKDLYEKANSKD 316


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 40  NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLQN 150
           N   ST + +  ++K+F  R   +TP ++K R +LQ+
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQS 305


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 152 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 283
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 248 RPGGKLCLSFSAFSLSVMTRVYRNLEHRTLNLTFCRVLLYFD 123
           +P   L L  SA +      +YR+ E+ + N+  C+V L +D
Sbjct: 85  QPTDILPLFESAVTTVAKRLLYRSQENASTNIPTCQVTLRYD 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,941
Number of Sequences: 5004
Number of extensions: 18644
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)