Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D06
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    68   3e-12
Z81084-7|CAB03111.1|  312|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z81037-10|CAB02754.1|  312|Caenorhabditis elegans Hypothetical p...    27   3.7  
X95609-1|CAA64867.1|  312|Caenorhabditis elegans mec-8 protein.        27   3.7  
X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.        27   3.7  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 31/57 (54%), Positives = 40/57 (70%)
 Frame = +1

Query: 82  KTF*LRRGGKTPNRSK*RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 252
           K F ++   K     K ++   N KFKVRC+ +LYTLV+ DK+KAEKLKQSLPPG+Q
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQ 65



 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 25/28 (89%), Positives = 28/28 (100%)
 Frame = +3

Query: 57  MPREIKDIKDFLIKARRKDAKSVKIKKN 140
           MP+EIK+IKDFL+KARRKDAKSVKIKKN
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKN 28


>Z81084-7|CAB03111.1|  312|Caenorhabditis elegans Hypothetical
           protein F46A9.6 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPP 243
           R+ LQ V+F   C++ L   +     K  + KQS PP
Sbjct: 90  RKMLQGVRFDPECAQVLRLELAKSNTKVARPKQSPPP 126


>Z81037-10|CAB02754.1|  312|Caenorhabditis elegans Hypothetical
           protein F46A9.6 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPP 243
           R+ LQ V+F   C++ L   +     K  + KQS PP
Sbjct: 90  RKMLQGVRFDPECAQVLRLELAKSNTKVARPKQSPPP 126


>X95609-1|CAA64867.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPP 243
           R+ LQ V+F   C++ L   +     K  + KQS PP
Sbjct: 90  RKMLQGVRFDPECAQVLRLELAKSNTKVARPKQSPPP 126


>X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 RRTLQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPP 243
           R+ LQ V+F   C++ L   +     K  + KQS PP
Sbjct: 90  RKMLQGVRFDPECAQVLRLELAKSNTKVARPKQSPPP 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,281,705
Number of Sequences: 27780
Number of extensions: 107033
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)