Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D04
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   3.4  
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)                 29   4.5  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           28   5.9  
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)          28   7.8  
SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)          28   7.8  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  28   7.8  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)           28   7.8  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    28   7.8  
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 206  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 385
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 386  LRTQNRAAQSE 418
            +    R  Q +
Sbjct: 1032 IYRHARVCQGD 1042


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 169 YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEI 294
           Y     S  +I    + VGV ++   G  ++D  QHY K+E+
Sbjct: 519 YARSVTSTLKISSAETHVGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
          Length = 435

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 101 ISACSSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSV-LPCSSLAVPLLLTDSNI 277
           +SAC +  PL G SSY     + T C +  T  ST S  +SV L C+ + +P ++  S I
Sbjct: 172 VSACVAIGPLVGWSSYVESSHQLT-CHMDWTRKSTPSFAYSVNLICALIYLPGIICIS-I 229

Query: 278 MVRARSKTRT 307
               R +  T
Sbjct: 230 FAYTRRRINT 239


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 124 TFVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EI 294
           TF  +L+   G       +TP  +   IFY+LVG+ L + +   + + + HY K     I
Sbjct: 109 TFATHLLTTIGYG-NLTPKTPGGQLFTIFYALVGIPLTLLTLKSMGNHYNHYIKKLIILI 167

Query: 295 KDKNLAKASLAIINGAILLVD 357
           + + L +  +  + G + L D
Sbjct: 168 ETRCLKRTEVKGLEGKVCLGD 188


>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
          Length = 767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 188 HTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 328
           H+  +  + +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 226 HSVKALLAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)
          Length = 373

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 144 DEVPDKGTGDEHADIRIYI 88
           D+  D G GD+H+DIR YI
Sbjct: 335 DDDDDDGDGDDHSDIRGYI 353


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 366 EDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVNNNGTASDEQGNT----DQRIEDVD 199
           ++SIN  D++I+D    +    ++D   +I   S+N+N  + ++  N+    D  I D D
Sbjct: 415 DNSINDNDNSINDNDNSIYDSSIYDNDNSIYDNSINDNDNSINDNDNSINDNDNSINDND 474


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 169  YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKD--KNLAKASLAIIN 336
            Y+  T +   +    + VGV ++   G  IID  Q+Y K+ +    KN+A+ +L + N
Sbjct: 2900 YVRATVNSLNVSSDGTHVGVTVYAKIGERIIDLKQYYDKATLLSAIKNIAQPNLNVRN 2957


>SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 178 QTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EIKDKNLAKASLAIINGAIL 348
           +TP  +   IFY+LVG+ L + +   + + + HY K     I+ + L +  +  + G + 
Sbjct: 33  KTPGGQLFTIFYALVGIPLTLLTLKAMGNHYNHYIKKLIILIETRCLKRTEVKGLEGKVC 92

Query: 349 LVD 357
           L D
Sbjct: 93  LGD 95


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 447 CICMQHLKSFSDCAALFCVRSLASSLRED 361
           C C Q +K +SDC  L C       ++ D
Sbjct: 291 CKCFQSVKRYSDCDCLGCENPYGKKMQRD 319


>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 188 HTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 328
           H+  +  + +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 226 HSVKALLAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,629
Number of Sequences: 59808
Number of extensions: 390473
Number of successful extensions: 876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)