Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_D03
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 33 0.18
06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535 32 0.56
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 29 3.9
01_04_0051 + 15430980-15431591 29 3.9
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 29 5.2
01_01_0601 - 4476261-4476728 29 5.2
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 28 6.9
07_01_1097 - 10068431-10068655,10068797-10068880,10068945-100692... 28 6.9
02_05_1127 + 34292894-34293284,34293948-34295443 28 6.9
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 28 9.1
11_06_0238 - 21614535-21615347,21616759-21617352 28 9.1
03_04_0185 - 18213830-18214552 28 9.1
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 28 9.1
01_06_1594 + 38509676-38509776,38509808-38510096 28 9.1
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -1
Query: 250 SARTQPANKMAATELGRYKNIVTALITGNYVSLISPNEPALTIIINLFLMQLIFSTTTHX 71
S T+ + + L +Y NIVTAL NY ++ + + T ++ L ++Q I TT
Sbjct: 388 SRATKQIVALLSAPLEKYSNIVTALELSNYPRVMDYLDNSTTKVMALVIIQSIMKNTTCI 447
Query: 70 SKS 62
S S
Sbjct: 448 STS 450
>06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535
Length = 145
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 515 RRS*VRSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQP-GRR*IRANTQGAGEPHQHG 691
RR V C E P G R G R R A G+ GRR RA + AG P G
Sbjct: 35 RRLAVSPRCREVASPGGEGARRGGVGVGRGGERAASGGEEQGRRRRRAGNEVAGRPEGRG 94
Query: 692 G*SR 703
G R
Sbjct: 95 GAGR 98
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +2
Query: 533 SGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQP-GRR*IRANTQGAGEPHQHGG*SRCH 709
SG PEPT A G VRG DR A + G GA + G
Sbjct: 192 SGMPEPTSRAAAGAEAGVRGIMMDRFLPAAQAVAIGSPQYTFRKAGAASATSNSGRELAR 251
Query: 710 LGGSTVTG 733
GS +G
Sbjct: 252 AAGSNASG 259
>01_04_0051 + 15430980-15431591
Length = 203
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 566 GGGPREVRGASRDRHRQAVRGQP 634
GG P V+ A RD HR+A+R +P
Sbjct: 93 GGAPAWVQDARRDAHRRALRRRP 115
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/103 (24%), Positives = 41/103 (39%)
Frame = +2
Query: 365 KVNQNDDKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCP 544
+ +Q K + EEE+ E G+G+ P+ + S A G P
Sbjct: 590 ETSQQRAKEEGEEEHDEGEEEHEEGEEGDGQSDEEEEEQPEEIGSSQLA--------GAP 641
Query: 545 EPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAG 673
+P+ P+ G R + DR+ + P R +R T+G G
Sbjct: 642 QPSQPSQGRPQR--KRVPVDRY--CLTSAPNRMALRLYTEGNG 680
>01_01_0601 - 4476261-4476728
Length = 155
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/63 (36%), Positives = 27/63 (42%)
Frame = +2
Query: 560 TAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCHLGGSTVTGEX 739
TAG GP + RG R+AV G GR R + A E + G S GG G
Sbjct: 36 TAGAGPTDHRG-----RRRAVTGDGGRH--RERRRAAREAARGNGGSEGEGGGGAHRGAR 88
Query: 740 HRR 748
RR
Sbjct: 89 RRR 91
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 174 ISAVTIFL*RPSSVAAILFAGCVRAEPISTIRNSNDERGCQLAFSRVGRRC 326
I ++T+F S+AA++ + +RA I + N+N+ + + RVG C
Sbjct: 535 IRSLTVFNEPSESIAALICSSKLRAVRILDLSNANEFKITRRDIERVGELC 585
>07_01_1097 -
10068431-10068655,10068797-10068880,10068945-10069292,
10069477-10069510,10069617-10070230,10079179-10079553,
10079599-10079853,10079983-10080300
Length = 750
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 285 RGCQLAFSRVGRRCLCLLAFKHSILTQK*IKMTTN 389
R C L FS+ RCL F H+ Q +KM+ N
Sbjct: 123 RACALDFSKDWERCLPYAEFSHNNSFQASLKMSPN 157
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +2
Query: 542 PEPTYPTAGGGPR----EVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCH 709
P PT PR E R R R+A GQP RR ++ G GG S H
Sbjct: 55 PRPTRRAHPASPRASWAEAARLERRRRRRAT-GQPKRRWPPGSSGGGARGGSSGGDSDGH 113
Query: 710 LGGSTVTGE 736
GG + G+
Sbjct: 114 QGGPSGGGD 122
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 467 RVRGVPQTVASGNYAKRRS*VRSGCPEPTYPTAGGGPREVRGASRDRH--RQAVRGQP 634
RV+ Q V G + + S + P PT P +G G G + RH R+ RG P
Sbjct: 30 RVKKPAQQVGKGQWGQWNS--PNAAPAPTAPRSGSGAFHHSGNTLVRHSDRRPARGTP 85
>11_06_0238 - 21614535-21615347,21616759-21617352
Length = 468
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 537 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 427
P+ Q+L A V G RPYI F ++FD F
Sbjct: 312 PMSEQILFLASLVARRVFGLAGVRPYIPDFKMAFDHF 348
>03_04_0185 - 18213830-18214552
Length = 240
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 173 NQCGNDIFVASKFGGGHFIRRLCSCR 250
N C +F S G GH IR + SC+
Sbjct: 101 NYCHKILFACSSGGTGHLIRHIKSCK 126
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 696 HPPCWCGSP-APCVFARIHRRPGWPRTAWRWRSRDAPRTSR 577
HPP P AP ++A + R P +P AW+WR A +R
Sbjct: 14 HPPALRARPLAPHLYAALPRAP-YP--AWQWRGARAASPAR 51
>01_06_1594 + 38509676-38509776,38509808-38510096
Length = 129
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +2
Query: 419 EEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPTAGGGPREVRGAS 598
EEE A ++G G GR +G +RR +R PT GGG VRG
Sbjct: 58 EEEPALGKKGGGAS-GRE---DICTCTGEKRRRRRWIRLKAAAPTDAVRGGGGAGVRGER 113
Query: 599 RDR 607
R R
Sbjct: 114 RRR 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,335
Number of Sequences: 37544
Number of extensions: 405568
Number of successful extensions: 1346
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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