Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_D03
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 93 2e-19
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 93 2e-19
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 93 2e-19
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 91 8e-19
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 91 8e-19
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 70 2e-12
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 70 2e-12
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 70 2e-12
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 70 2e-12
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 70 2e-12
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 70 2e-12
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 53 2e-07
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 31 0.87
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen prot... 29 3.5
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 24 4.4
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 24 4.5
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 6.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 6.1
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 28 8.1
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 28 8.1
AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine re... 28 8.1
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/118 (41%), Positives = 72/118 (61%)
Frame = +3
Query: 393 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 572
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 573 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A +IA
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIA 127
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/118 (41%), Positives = 72/118 (61%)
Frame = +3
Query: 393 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 572
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 573 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A +IA
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIA 127
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/118 (41%), Positives = 72/118 (61%)
Frame = +3
Query: 393 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 572
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 573 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A +IA
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIA 127
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 91.1 bits (216), Expect = 8e-19
Identities = 50/117 (42%), Positives = 71/117 (60%)
Frame = +3
Query: 393 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 572
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 573 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLI 743
TAT+KL +A++AADE++R R+AL N+ +M+DDR + LE +L + I
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSI 126
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 91.1 bits (216), Expect = 8e-19
Identities = 50/117 (42%), Positives = 71/117 (60%)
Frame = +3
Query: 393 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 572
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 573 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLI 743
TAT+KL +A++AADE++R R+AL N+ +M+DDR + LE +L + I
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSI 126
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/109 (36%), Positives = 58/109 (53%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 599
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 600 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 155
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/109 (36%), Positives = 58/109 (53%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 599
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 600 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 155
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/109 (36%), Positives = 58/109 (53%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 599
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 600 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 155
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/109 (36%), Positives = 58/109 (53%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 599
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 600 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 155
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/109 (36%), Positives = 58/109 (53%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 599
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 600 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 155
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/109 (36%), Positives = 58/109 (53%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 599
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 600 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 155
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +3
Query: 606 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXLIA 746
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A L+A
Sbjct: 18 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLA 64
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.87
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +2
Query: 470 VRGVPQTVASGNYAKRRS*VRSGCPE-PTYPTAGGGPREVRGASRDRHRQAVRGQPGRR* 646
VRG P + R V +G P PT P GPR + G + + GQPG R
Sbjct: 183 VRGEPGSPGEKGPTGDRGKVLNGAPPGPTGPPGKVGPRGLSGGKGHDGKPGLGGQPGVRG 242
Query: 647 IRANTQGAGEP 679
AG P
Sbjct: 243 AVGARGDAGNP 253
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 542 PEPTYPTAGG--GPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCHLG 715
P+P P G GPR RG + + + G PG+ R G GEP Q G + L
Sbjct: 214 PKPGQPGQPGRAGPRGPRGVAGIKGKDGAPGSPGQPGPRG---GPGEPGQDGAPGQPGLP 270
Query: 716 GSTVT 730
GS T
Sbjct: 271 GSDGT 275
>AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen protein
55 protein.
Length = 208
Score = 29.1 bits (62), Expect = 3.5
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
Frame = +2
Query: 281 RARLSVGIFASRTKVSLLISV*AFDFNTKVNQNDDKHAARNDFRRFEEENASNERGNG-K 457
R +L I + ++ L +V + FN + D+ +F+ F E+ A N
Sbjct: 20 RVKLFQNIGSGVAVIACLFAV-GYSFNDINSFYDEVMDTMTEFK-FNEQQAWNSMVKPID 77
Query: 458 I*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPG 637
+ GR++ T + + +S GCP GP GA ++ V GQPG
Sbjct: 78 VFGRIKRRANTRQAQCNCESQS---QGCP-----AGPPGPPGQPGAQGEQGHVEVSGQPG 129
Query: 638 RR*IRANTQGAGEPHQHGG 694
+ G G+P Q GG
Sbjct: 130 APRPQGPAGGPGQPVQSGG 148
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 681 CGSPAPCVFARIHRRPGWPRTA 616
CG PAPC A I G TA
Sbjct: 67 CGGPAPCAAAPIAAPAGGYATA 88
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 693 PPCWCGSPA 667
PPC CG+PA
Sbjct: 36 PPCGCGAPA 44
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 681 CGSPAPCVFARIHRRPGWPRTA 616
CG PAPC A I G TA
Sbjct: 67 CGGPAPCAAAPIAAPAGGYATA 88
Score = 23.4 bits (48), Expect(2) = 4.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 693 PPCWCGSPA 667
PPC CG+PA
Sbjct: 36 PPCGCGAPA 44
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/67 (26%), Positives = 23/67 (34%)
Frame = +2
Query: 533 SGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCHL 712
+G P P P GP+ G + RG PG R + G+P G
Sbjct: 136 AGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGR 195
Query: 713 GGSTVTG 733
GG G
Sbjct: 196 GGQRSRG 202
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/67 (26%), Positives = 23/67 (34%)
Frame = +2
Query: 533 SGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCHL 712
+G P P P GP+ G + RG PG R + G+P G
Sbjct: 136 AGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGR 195
Query: 713 GGSTVTG 733
GG G
Sbjct: 196 GGQRSRG 202
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 489 RLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESER 656
RLQ EI + +E EVAAL ++++ A A A+ A E+E+
Sbjct: 95 RLQKEIEKMKEDSEEVAALKQKLENTRRLLKVNMEETAQANARKEAAIARLTEAEQ 150
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 420 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 557
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine
receptor, class t protein67 protein.
Length = 311
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 397 CCMFVVILIHFCVKIECLNANKQRHLRPTRENAN*QPRSS 278
C ++++ H ++I+CL K R+ T++ PRSS
Sbjct: 272 CHPIIILIFHKTIRIDCLLKLKLRYNSSTQQRVWKPPRSS 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,628
Number of Sequences: 27780
Number of extensions: 311816
Number of successful extensions: 1030
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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