Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D02
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb...    49   7e-07
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    28   1.0  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    25   7.3  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   7.3  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   9.6  

>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 21/43 (48%), Positives = 34/43 (79%), Gaps = 4/43 (9%)
 Frame = +3

Query: 165 EKMQKQRILQKAE----MTHKQRVEKFNQHLDSLTEHFDIPKV 281
           E +Q+QR+LQKA+     THK R++++N+ L+S +EHFD+PK+
Sbjct: 73  ESVQEQRLLQKAKNERLKTHKDRIDEYNRLLESQSEHFDMPKI 115


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 151 IKICRKKCKNKEYYKRL 201
           IKIC + C N+EYYK +
Sbjct: 357 IKICYEPCDNEEYYKSI 373


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 126 RRTKAEIAYQNMQEKMQKQRI-LQKAEMTHKQRVEKFNQHLDSLTEHFD 269
           R TK      N+  K++   I +  A  +     EK + HL  L +HFD
Sbjct: 83  RHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHFD 131


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 430 YSGYLNYQKKL*NIKTLLQFDLKF*SVSTFHIFTI 326
           Y  Y+NY+ K   +K L Q   K+     FH FT+
Sbjct: 261 YYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTV 295


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 484 ISSRWAYITNTGKN 443
           I  R AYITNTGKN
Sbjct: 140 IRVRLAYITNTGKN 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,331
Number of Sequences: 5004
Number of extensions: 41784
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)