Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D02
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0603 - 30295130-30295389,30296840-30296987                       53   2e-07
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   7.5  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   7.5  

>02_05_0603 - 30295130-30295389,30296840-30296987
          Length = 135

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 35/53 (66%)
 Frame = +3

Query: 123 DRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKV 281
           D  T AE  Y   ++K+   ++ + A  +H+ R++ FNQ+L +L+EH+DIPKV
Sbjct: 80  DHLTPAERRYMEQKQKIDMHKLAKVANKSHRDRIQDFNQYLANLSEHYDIPKV 132


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 401 FFLVIKITTIYPICIFSCISNVCPSA 478
           +FL+  I ++ P+C FS +S + P A
Sbjct: 100 YFLLTAILSLTPVCPFSAVSMIAPLA 125


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 117 NVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSL 254
           ++D+R++AE   + +QEK++    +QKA +     V K    L  L
Sbjct: 50  DLDKRSQAETQRRKIQEKLRVALFVQKAALQFIDAVRKTEHPLPEL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,691
Number of Sequences: 37544
Number of extensions: 218798
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)