Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_D02
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)                     81   6e-16
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   33   0.27 
SB_8371| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 31   0.62 
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   28   5.8  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     28   5.8  
SB_13889| Best HMM Match : Ribosomal_L35p (HMM E-Value=8.5)            28   5.8  

>SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)
          Length = 358

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = +3

Query: 114 TNVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPK 278
           T VD RT A+ AY  +QEK   +RIL+KAE THKQRVEKFN++LD LTEH+DIPK
Sbjct: 58  TPVDDRTPAQKAYDRLQEKRAAERILKKAEKTHKQRVEKFNEYLDELTEHYDIPK 112


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 120 VDRRTKAEIAYQNMQEKMQKQRILQKA-EMTHKQRVEKFNQHLDSLTEHFDIPK 278
           ++ +T  EI   +++ K+Q     ++A E+ HK +VE+ N  L  L  HF+  K
Sbjct: 776 LEEKTHCEIEKNDVEIKLQSVMAEKEALEIQHKDKVEELNSSLGILQTHFEEQK 829


>SB_8371| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 323

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 123 DRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFD 269
           +R    E A+  ++E  + Q+ L+     HKQR+E+    LD  +   D
Sbjct: 94  EREVNVEDAHNRLRENTEIQQQLRDKNQEHKQRIEELTFELDLASAEID 142


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 135 KAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQ 239
           + ++  Q  Q++ Q+Q+ LQK +   KQR+ +  Q
Sbjct: 663 RQQLELQKRQQEQQRQQELQKRQQEEKQRMAEMRQ 697


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/71 (19%), Positives = 37/71 (52%)
 Frame = +3

Query: 117 NVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKVSWTK* 296
           N   + + + + QN Q   Q+Q+  ++ +   + + +++NQ+ +    +   P +S +  
Sbjct: 532 NQGNQQQQQDSQQNRQPGGQQQQQPEQQQTNSQLQSQQYNQNQEQAPLYSQYPTLSSSGV 591

Query: 297 NHEQQRIQFSI 329
           NH++   +FS+
Sbjct: 592 NHQESSERFSV 602


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 129 RTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDS 251
           +TK+E A Q + EK ++ R+ ++     ++ +++ + H DS
Sbjct: 84  KTKSEKAQQELHEKSERLRVTEEDVSNLQRAIQELSLHKDS 124


>SB_13889| Best HMM Match : Ribosomal_L35p (HMM E-Value=8.5)
          Length = 71

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 168 KMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKVSWTK*NHE 305
           K +K RIL K  +T  Q +  ++Q L+ L+   D+     TK  HE
Sbjct: 21  KERKNRILSKKFVTQAQEIVPWSQSLERLSIQRDLACSLTTKETHE 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,952
Number of Sequences: 59808
Number of extensions: 281502
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)