Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C24
         (590 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    63   5e-09
UniRef50_A3IDA0 Cluster: Signaling protein; n=1; Bacillus sp. B1...    33   5.0  
UniRef50_Q3WHT5 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  
UniRef50_Q9LW32 Cluster: Selenium-binding protein-like; n=3; cor...    32   8.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 62.9 bits (146), Expect = 5e-09
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = +3

Query: 216  YYYTSHRQSRVHPYYLEPMRSSTVRFLRSV*PHTILHWNEL 338
            Y+ T+  +SRVHPYYLEP+RSSTVRF RS  P TI  WNEL
Sbjct: 905  YHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNEL 945


>UniRef50_A3IDA0 Cluster: Signaling protein; n=1; Bacillus sp.
           B14905|Rep: Signaling protein - Bacillus sp. B14905
          Length = 316

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 467 LLCNHLKLAV-SGRLQYQGTVKSLSNAESHLKK 372
           L C  L +AV + + QY G+V+ LSNA +H+KK
Sbjct: 263 LTCTTLSVAVITNKFQYFGSVEQLSNAVTHVKK 295


>UniRef50_Q3WHT5 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 276

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -1

Query: 443 AVSGRLQYQGTVKSLSNAESHLKKDMS*RSGNNVDKFIPVKDGMW 309
           AVS R+ YQGTV   S  + HL  D++ RS   V       DG+W
Sbjct: 164 AVSYRIWYQGTV-MFSGTDVHLPADVNPRSAAAVKAVASGLDGVW 207


>UniRef50_Q9LW32 Cluster: Selenium-binding protein-like; n=3; core
           eudicotyledons|Rep: Selenium-binding protein-like -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 659

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 171 IGFLRLQTAYSSAGIHSKKWRWWSSVRTKFTV 76
           I F+ +  A S AG+H + WRW+++++ +F V
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGV 420


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,541,515
Number of Sequences: 1657284
Number of extensions: 10735167
Number of successful extensions: 21624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21618
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)