Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C24
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   3.6  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   6.2  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   8.3  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 120  LSGCPHWSTQFEVLGSRFTAELALVANYCYLHYYYTSHRQSRVHPYYLEPMRSSTVRFLR 299
            L   P W+    ++  + T  L L ++  ++   YTS  Q+     Y +P  SS    LR
Sbjct: 1017 LPATPSWTRDSSLI--KETTNLNLDSDKKFVRETYTSSNQTNEPDVYDKPSNSSRTSLLR 1074

Query: 300  S 302
            S
Sbjct: 1075 S 1075


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 294 LRSV*PHTILHWNELIHVVT 353
           L S+  H ILHW EL +VV+
Sbjct: 322 LWSILRHKILHWTELEYVVS 341


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/26 (34%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 51  IVIGFLINKP*TLYGQ-MTTIAIFLS 125
           +++G++I++P TLY + + T+ +F+S
Sbjct: 350 VIVGWIISQPLTLYFESLETVILFVS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,444
Number of Sequences: 5004
Number of extensions: 45098
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)